DRSC/TRiP Functional Genomics Resources

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Protein Alignment FHL1 and lim-9

DIOPT Version :10

Sequence 1:NP_001427698.1 Gene:FHL1 / 2273 HGNCID:3702 Length:339 Species:Homo sapiens
Sequence 2:NP_001300395.1 Gene:lim-9 / 3565712 WormBaseID:WBGene00006407 Length:793 Species:Caenorhabditis elegans


Alignment Length:229 Identity:102/229 - (44%)
Similarity:148/229 - (64%) Gaps:0/229 - (0%)


- Green bases have known domain annotations that are detailed below.


Human    18 AEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRFWHDTCF 82
            ::.|.|..|...|.|::|:.:|....|:||::...||.|.||.||||.|||::.||::.||:.||
 Worm   510 SDHFCCWQCDQTLTGQRYIMRDEQPYCIKCYEDVFANQCDECAKPIGIDSKDLSYKDKHWHEHCF 574

Human    83 RCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSN 147
            .|:.|...|.:..|.:|:::|.|:.|..:..:.:|.||.:...||.:.:||||..||..||.|::
 Worm   575 LCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFRAGMKKMEYKGKQWHDKCFCCAH 639

Human   148 CKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLA 212
            ||..|||.||.||.:|.:|..|:|.|||..|.||.|.||:||:||:::|||.:||.|..|:..||
 Worm   640 CKLAIGTKSFIPKNDDVFCGPCYEEKFATRCSKCKKVITAGGVTYKNEPWHRECFCCTNCNSSLA 704

Human   213 GQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITG 246
            |||||:.:::.||.:||.:..||:|..|..||||
 Worm   705 GQRFTSKDEKPYCANCYGDLFAKRCNACTKPITG 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FHL1NP_001427698.1 None
lim-9NP_001300395.1 PET_LIMPETin_LIM-9 329..412 CDD:193605
LIM1_LIMPETin 423..480 CDD:188798
LIM2_Testin_like 486..541 CDD:188727 10/30 (33%)
LIM3_LIMPETin 544..602 CDD:188805 26/57 (46%)
LIM4_LIMPETin 609..662 CDD:188809 25/52 (48%)
LIM5_LIMPETin 670..721 CDD:188814 26/50 (52%)
LIM6_LIMPETin 729..784 CDD:188816 6/10 (60%)
Blue background indicates that the domain is not in the aligned region.

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