DRSC/TRiP Functional Genomics Resources

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Protein Alignment FHL1 and rga1

DIOPT Version :10

Sequence 1:NP_001427698.1 Gene:FHL1 / 2273 HGNCID:3702 Length:339 Species:Homo sapiens
Sequence 2:NP_596743.1 Gene:rga1 / 2541022 PomBaseID:SPBC3F6.05 Length:1150 Species:Schizosaccharomyces pombe


Alignment Length:169 Identity:44/169 - (26%)
Similarity:71/169 - (42%) Gaps:13/169 - (7%)


- Green bases have known domain annotations that are detailed below.


Human   107 KCTTREDSPK-CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDF------ 164
            |...:..|.| |..|.: :::| |.|...|.::|.:||.|.:|..::.: .|||..:..      
pombe   105 KAVRKVSSSKICASCGQ-VISG-QYVRALGNIYHLECFRCHDCNSLVAS-KFFPIDDPTLNKQVP 166

Human   165 YCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLA-GQRFTAVEDQYYCVDC 228
            .|.|.:..:....|..|..|:....||..::.:|.:.|.|..|..... ...:...|.:.||...
pombe   167 LCETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYH 231

Human   229 YKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKPPVCH 267
            |....|.:|.||..||. ::.|....:.||:....| ||
pombe   232 YSTLFAARCCGCDGPIL-RQFVEVYRNGVSQNWHVP-CH 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FHL1NP_001427698.1 None
rga1NP_596743.1 LIM1_Lrg1p_like 116..172 CDD:188777 16/58 (28%)
LIM2_Lrg1p_like 180..232 CDD:188778 12/51 (24%)
LIM 485..539 CDD:413332
RhoGAP_fLRG1 835..1044 CDD:239862
Blue background indicates that the domain is not in the aligned region.

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