Protein Alignment Ybx1 and lin-28

DIOPT Version :9

• Sequence 1: XP_006502996.1
• Gene: Ybx1 / 22608
• MGIID: 99146
• Length: 326
• Species: Mus musculus
• Sequence 2: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Alignment Length: 182
• Identity: 56/182 - (30%)
• Similarity: 75/182 - (41%)
• Gaps: 44/182 - (24%)

Mouse    30 SGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 94
            |...|..|..|.|.....|..:      ||..|||||..|:||:..||..::|||||:.|:.:.
  Fly    18 SSTSSANPANLASPTEECGCVR------LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSG- 75

Mouse    95 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR-------------- 145
               .||:|:.|.|||:.....:|.||..|:...|...|||.|....|...|
  Fly    76 ---FRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHI 137

Mouse   146 --------YPRR----RG--------PPRNYQQNYQNSESGEKNEGSESAPE 177
                    .|:|    ||        |.:|..|::.||:|...|..|.:|.|
  Fly   138 ASECALGPQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQE 189

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ybx1	XP_006502996.1	CSD	57..126	CDD:278729	29/68 (43%)
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	27/63 (43%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C167841968
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG1278
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000228
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.740