DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Slc6a20b and List

DIOPT Version :9

Sequence 1:NP_035861.2 Gene:Slc6a20b / 22599 MGIID:1336891 Length:635 Species:Mus musculus
Sequence 2:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster


Alignment Length:581 Identity:188/581 - (32%)
Similarity:295/581 - (50%) Gaps:96/581 - (16%)


- Green bases have known domain annotations that are detailed below.


Mouse    45 EKVRPKWDNPLQFLLVCISYAVGLGNVWRFPYLCQMYGGGSFLVPYIIMLIVEGMPLLYLELAVG 109
            ||...:|.|.|:||..|||.:|||||:|||||:....|||:|::||:|.|:|.|.|:.|||:::|
  Fly    15 EKPAEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVIGRPVYYLEISLG 79

Mouse   110 QRMRQGSIGAWRTISPYLSGVGIASLVVSFLASVYFNVINTWALWYLFHSFQDPLPWSVCPLNSN 174
            |...:|.:.|: .::|.|.||.:..::.:..:..|::.|....|.:...||...||||.|     
  Fly    80 QFTGRGVVKAF-DMAPLLKGVALGQVLATAASITYYSSIMALTLRFWLASFGSELPWSRC----- 138

Mouse   175 HTGYDEECE---------KASSTQYFWYRKTLNISPSIQENG--GVQWEPALCLTLAWLMVYLCI 228
            ...:..:|.         |.|..|.::.|:.|:..|:| :||  ...|:...||.:|||::...:
  Fly   139 WESWGTDCHDGNAQNSSGKMSPAQLYFEREILHEVPNI-DNGLSLPNWQLVACLAIAWLVIGGVL 202

Mouse   229 LRGTESTGKVVYFTTSLPYFVLIIYLVRGLTLHGATNGLAYMFTPKIEQLANPKAWINAATQIFF 293
            :||.:|:||..||....||.||:|.|:|.:||.||.:|:.|.|.|:..:|.||..|..|.||:||
  Fly   203 IRGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQWRELLNPLVWYAAVTQVFF 267

Mouse   294 SLGLGCGGLIAFASYNEPSNDCQKHALIVSVINSTTAIFSSIVTFSIYGFKATFNYENCLNKVIL 358
            ||.:..|.||.:||||..:.:.....:|::.::|.::|.:..:||.|.|                
  Fly   268 SLAICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILG---------------- 316

Mouse   359 LLTNSFDLEDGFLTVSNL-EEVKNYLASTYPNKYSEVFPHIRNCSLESELDTAVQ-GTGLAFIVY 421
                            || .|..|                       .::.:.|: |.|||||.|
  Fly   317 ----------------NLARETGN-----------------------PDIGSVVKGGAGLAFISY 342

Mouse   422 TEAIKNME-VSQLWSVLYFFMLLTLGMGSMVGTGTAILTPLTDSKIISSYLPKEAISGLVCLLNC 485
            .|||...| |.|:::||:|.||..||:||.||.|:.||..:.|...:.|....:..|||. :|..
  Fly   343 PEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMGSCILRVIRDQFGLRSPPIWKLASGLT-VLGF 406

Mouse   486 AIGMVFTMEAGNYWFDLFNDYTATLSLLLIVLVETIAVCYVYGLKRFESDLRAMTGRTLSWYWKV 550
            ::.:|:....|.:..:|.:.|..:.:.|::.:.|.:||.::||:.||..|::.|.|....|||::
  Fly   407 SVSIVYMTPGGQFILNLVDFYGVSFTALILAIGELVAVAWIYGVNRFCEDIKFMMGIETGWYWRL 471

Mouse   551 MWAFVSPLLIVGLFIFYLSDYILTGTLQYQAWDATQGHVVTKDYPTYA------LAVIGLL 605
            .|.|::|.|:..:.|:.|.|   ...|:|:.          ..|||.|      ||.:||:
  Fly   472 CWRFITPGLMTAVLIYMLLD---MSALEYKG----------VGYPTLAHVFGCFLATLGLI 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Slc6a20bNP_035861.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..38
SLC5-6-like_sbd 45..620 CDD:294310 188/581 (32%)
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 174/532 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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