DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and frk-1

DIOPT Version :9

Sequence 1:XP_011541568.1 Gene:FER / 2241 HGNCID:3655 Length:837 Species:Homo sapiens
Sequence 2:NP_001369901.1 Gene:frk-1 / 191635 WormBaseID:WBGene00001487 Length:390 Species:Caenorhabditis elegans


Alignment Length:404 Identity:146/404 - (36%)
Similarity:233/404 - (57%) Gaps:37/404 - (9%)


- Green bases have known domain annotations that are detailed below.


Human   436 KSALGSSALSDMISISEKPLAEQDWYHGAIPRIEAQELLKKQGDFLVRESHGKPGEYVLSV---Y 497
            ||:...::::|.|..:|       :|||.:||.:|:..||::||||||::...||:.||::   .
 Worm     6 KSSNNDASVTDDIRSAE-------YYHGMVPRQDAEGFLKREGDFLVRKTEQMPGKVVLAMSVRV 63

Human   498 SDGQRRHFIIQY--VDNMYRFEGT-GFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKDKKWILS 559
            :|...|||::..  ..|.:.||.| ..|.|.:||:.|.|||..|:..||..:..|:.: ..|:::
 Worm    64 TDELCRHFMLNMDPTSNKFYFEHTHQESTISELINWHMTTKTPISAASGAKIRRPMER-SPWLIN 127

Human   560 HEDVILGELLGKGNFGEVYKGTLKD--KTSVAVKTCKEDLPQELKIKFLQEAKILKQYDHPNIVK 622
            |:.::..:.||:|.||:|:...|..  |..|||||.:.:..:|.:::|::||:::::|.|.::||
 Worm   128 HDSIVANKKLGEGAFGDVFIAELDQGGKQEVAVKTMRAEATREARLRFMKEARLMRKYQHKHVVK 192

Human   623 LIGVCTQRQPVYIIMELVSGGDFLTFLRRKKDELKLKQLVKFSLDAAAGMLYLESKNCIHRLCEG 687
            ||||.....|:.|:||....|..|:.|  ||:::.|.:.::|:.:||.|:.|||...||||    
 Worm   193 LIGVAIHEHPLMIVMEYCPNGSLLSHL--KKNKVSLIEKLRFTTEAADGIAYLERSKCIHR---- 251

Human   688 KGEMKETSNLGDLAARNCLVGENNVLKISDFGMSRQEDGGVYSSSGLKQIPIKWTAPEALNYGRY 752
                       |:||||||:...|.|||||||||..:|  ......|:::||||.|||.:....|
 Worm   252 -----------DIAARNCLLSAKNELKISDFGMSDNKD--EIKDETLEKVPIKWLAPETMQEKVY 303

Human   753 SSESDVWSFGILLWETFSLGVCPYPGMTNQQAREQ-VERGYRMSAPQHCPEDISKIMM-KCWDYK 815
            :.::|:|:||:|:||.:|.|..||||:|..|.|.: |...|||..|......::.::. .||...
 Worm   304 THKTDIWTFGVLVWEIYSDGAEPYPGLTKIQTRAKIVVNDYRMKMPDGTHPTVADVVTGTCWQKN 368

Human   816 PENRPKFSELQKEL 829
            ||.|.....:.|:|
 Worm   369 PEKRSTMDSIHKKL 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERXP_011541568.1 F-BAR_Fer 5..238 CDD:153370
SH2_Fps_family 453..538 CDD:198224 34/90 (38%)
Pkinase_Tyr 563..829 CDD:285015 100/269 (37%)
PKc_like 566..831 CDD:304357 101/268 (38%)
frk-1NP_001369901.1 SH2_Fps_family 16..107 CDD:198224 37/97 (38%)
TyrKc 131..382 CDD:197581 100/269 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H74300
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3524
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D255116at33208
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 1 1.000 - - mtm5010
orthoMCL 1 0.900 - - OOG6_100013
Panther 1 1.100 - - O PTHR24418
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3894
SonicParanoid 1 1.000 - - X1749
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.900

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