Sequence 1: | NP_035831.2 | Gene: | Vim / 22352 | MGIID: | 98932 | Length: | 466 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001260974.1 | Gene: | LamC / 36615 | FlyBaseID: | FBgn0010397 | Length: | 640 | Species: | Drosophila melanogaster |
Alignment Length: | 474 | Identity: | 138/474 - (29%) |
---|---|---|---|
Similarity: | 228/474 - (48%) | Gaps: | 95/474 - (20%) |
- Green bases have known domain annotations that are detailed below.
Mouse 31 VTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTE 95
Mouse 96 FKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAEL---EQLKGQGKSRLGDLYEEEMREL 157
Mouse 158 RRQVDQLTNDKARVEV-------ERDNL-------------AEDIMRL----------------- 185
Mouse 186 -REKLQEE----MLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQEL 245
Mouse 246 QAQIQEQHVQIDVDVSK---PDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
Mouse 308 ALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNM 372
Mouse 373 KEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPTFSSLNLRETNLESLPLVDT- 436
Mouse 437 -HSKRTLLIKTVETRDGQV 454 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vim | NP_035831.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..33 | 1/1 (100%) | |
Head | 2..95 | 13/63 (21%) | |||
Filament_head | 14..101 | CDD:309741 | 13/69 (19%) | ||
Coil 1A | 96..131 | 18/34 (53%) | |||
Filament | 102..410 | CDD:306535 | 115/355 (32%) | ||
Linker 1 | 132..153 | 6/23 (26%) | |||
Coil 1B | 154..245 | 32/132 (24%) | |||
Linker 12 | 246..268 | 5/24 (21%) | |||
Coil 2 | 269..407 | 49/137 (36%) | |||
[IL]-x-C-x-x-[DE] motif. /evidence=ECO:0000250|UniProtKB:P08670 | 326..329 | 1/2 (50%) | |||
Tail | 408..466 | 10/49 (20%) | |||
LamC | NP_001260974.1 | Filament | 45..401 | CDD:278467 | 115/355 (32%) |
ATP-synt_B | <67..>142 | CDD:304375 | 19/74 (26%) | ||
MreC | <178..>224 | CDD:302802 | 16/45 (36%) | ||
LTD | 473..574 | CDD:279300 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG0977 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |