DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vax1 and abd-A

DIOPT Version :10

Sequence 1:NP_033527.1 Gene:Vax1 / 22326 MGIID:1277163 Length:338 Species:Mus musculus
Sequence 2:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster


Alignment Length:172 Identity:58/172 - (33%)
Similarity:76/172 - (44%) Gaps:34/172 - (19%)


- Green bases have known domain annotations that are detailed below.


Mouse    13 HSDTEAARVSKNAHKESREIKGAEG--SLPAAFLKEPQGAFSGSGASEDCNKSKSNSSAD-PDYC 74
            |:...|:.||..:       .||.|  ||..|..:...|...|:|.:...      ..|| |.|.
  Fly   319 HATAAASAVSAAS-------AGAIGVDSLGNACTQPASGVMPGAGGAGGA------GIADLPRYP 370

Mouse    75 RRILVRDAKGSIREIIL------PKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTEL 133
            ...|. |..||..|.::      |.|....|.::|.|.|   |...||.||....|:..|.|.|:
  Fly   371 WMTLT-DWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRF---QTLELEKEFHFNHYLTRRRRIEI 431

Mouse   134 ARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSV--VSETA 173
            |..|.|:|.|:|:||||||.|.||      |||:|  ::|.|
  Fly   432 AHALCLTERQIKIWFQNRRMKLKK------ELRAVKEINEQA 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vax1NP_033527.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..69 13/57 (23%)
Homeodomain 101..157 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..269
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 318..338
abd-ANP_732176.1 Homeodomain 399..455 CDD:459649 26/58 (45%)
Abdominal-A 456..478 CDD:403567 6/12 (50%)
Blue background indicates that the domain is not in the aligned region.

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