Sequence 1: | XP_017169419.1 | Gene: | Cdh23 / 22295 | MGIID: | 1890219 | Length: | 3361 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001036368.2 | Gene: | CadN2 / 35071 | FlyBaseID: | FBgn0262018 | Length: | 1799 | Species: | Drosophila melanogaster |
Alignment Length: | 2009 | Identity: | 444/2009 - (22%) |
---|---|---|---|
Similarity: | 722/2009 - (35%) | Gaps: | 546/2009 - (27%) |
- Green bases have known domain annotations that are detailed below.
Mouse 453 VKITLINENDNRPIFSQPLYNVSLYENITVGTSVLTVLATDNDVGTFGEVNYFFS--DDPDRFSL 515
Mouse 516 DKDTGLIMLIARLDYELIQRFTLTVIA-RDGGGEETTGRVRINVLDVNDNVPTFQKDAYVGALRE 579
Mouse 580 ----NEPSVTQLVRLRATDED-SPPNNLITY----SIVNASAFGSYFDISIYEGYGVISVSRPLD 635
Mouse 636 YEQIPNGLIY--LTVMAKDAGNPPLYSTVPVTIEVFDENDNPPTFSKPAYFVSVLENIMAGATVL 698
Mouse 699 FLNATDLDRSREYGQESIIYSLE--------GSSQFRINARSGEI-TTTSLLDRETKSEYILIVR 754
Mouse 755 AVDGGVGHNQKTGIATVNVTLLDINDNHPTW-KDAPYYINLVEMTP----PDSDVTTVVAVDPDL 814
Mouse 815 GENGTLVYSIHP-----PNKFYSLNS--TTGKIRTTHVMLDRENPDPVEAELMRKIIVSVTDCGR 872
Mouse 873 PPLKATSS-----ATVFVNLLDLNDNDPTFRNLPFVAEILEGTPAGVSVYQVVAIDLDEGLNGLV 932
Mouse 933 SYRMQVGMPRMDFVINSTSGVVTTTAELDRERIAEYQLRVVASDAGTPTKSSTSTLTVRVLDVND 997
Mouse 998 ETPTFFPAVYNVSVSEDVPREFRVVWLNCTDNDVGLNAELSYF------ITAGNVDGKFSVGYRD 1056
Mouse 1057 --------AVVRTVVGLDRETTAAYTLVLEAIDNGPVGKRRTGTATVFVTVLDVNDNR-----PI 1108
Mouse 1109 FLQSSYEASVPEDIPEGHSIVQLKATDADEGEFGRVWYRILHGNHGNNFRIHVGSGLL-MRGPRP 1172
Mouse 1173 LDRERNSSHVLMVEAYNHDLGPMRSSVRVIVYVEDVNDEA----------------------PVF 1215
Mouse 1216 TQQQYNRLGLRETAGIGTSVIVVRATDKDTGD--------GGL-----VNYRILSGAEGKF---- 1263
Mouse 1264 -----------EIDESTGLIVTVDYLDYETKTSYLMNVSAT--DGAPPFNQGFCSVYVTLLNELD 1315
Mouse 1316 EAVQFSNASYEAVIMENLALGTEIVRVQAYSIDNLNQITYR------------------------ 1356
Mouse 1357 ------FDAYTSAQAKALFK-------------------IDAITGVITVKGLVDREKGDFYTLTV 1396
Mouse 1397 VADDGGPKVDSTVKVYITVLDENDNSPR--FDFTSDSAISVPEDCPVGQRVATVKARDPDAGSNG 1459
Mouse 1460 QVVFSLASGNIAGAFEIITSNDSIGEV--FVAKPLDREELDHYILKVVASDRGTPPRKKDHILQV 1522
Mouse 1523 TILDVNDNPPVIESPFGYNVSVNENVGGGTSVVQVRATDRDI----------GINSVLSYYITEG 1577
Mouse 1578 NE-DMTF-RMDRISGEIATRPAPPDRERQNFYHLVVTVEDEGT-----------PTLSATTHVYV 1629
Mouse 1630 TIVDENDNAPVF-----QQPHYEVVLDEGPDTINTSLITVQALDLDEGPNGTV---------TYA 1680
Mouse 1681 IV---AGNI-----INTFRINKHTGVITAAKELDYEISHGRYTLIVTATDQCPILSHRLTSTTTV 1737
Mouse 1738 LVNVNDINDNVPTFPRDYEGPFDVTEGQPGPRVWTFLAHDRDSG--PNGQVEYS-VVDGDPLGEF 1799
Mouse 1800 VISPVEGVLRVRKDVELDRETIAFYNLTICARDRGVPPLSSTMLVGIRVLDINDNDPVLLNLPMN 1864
Mouse 1865 VTISENSPVSSFV--------------------AHVLASDADSGCNALLTFNITAGNRERAFFIN 1909
Mouse 1910 ATTGIVTVN-RPLDRER--IPE-------------YRLTVSV----------------------- 1935
Mouse 1936 -----------KDNPENPRIARKDFDLLLVSLADENDNHPLFTEGTYQAEVMENSPAGTPLTVLN 1989
Mouse 1990 G-PILALDADEDVYAVVTYQLLGTHSDLFVIDNSTGVVTVRSGIIIDREAFSPPFLELL------ 2047
Mouse 2048 --LLAEDIGQL-NGTAHLFITILDDNDNWPTFSPPTYTVHLLENCPPGFSVLQVTATDEDSGLNG 2109
Mouse 2110 ELVYRIEAGAQD-----RFLIHPVTGVIRVGNATIDREEQESYRLTVVATDRGTVPLSG 2163 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Cdh23 | XP_017169419.1 | Cadherin_repeat | 51..137 | CDD:206637 | |
Cadherin_repeat | 145..240 | CDD:206637 | |||
Cadherin_repeat | 249..353 | CDD:206637 | |||
Cadherin_repeat | 361..463 | CDD:206637 | 3/9 (33%) | ||
Cadherin_repeat | 472..564 | CDD:206637 | 32/94 (34%) | ||
Cadherin_repeat | 573..674 | CDD:206637 | 33/111 (30%) | ||
Cadherin_repeat | 683..781 | CDD:206637 | 36/106 (34%) | ||
Cadherin_repeat | 789..893 | CDD:206637 | 29/119 (24%) | ||
Cadherin_repeat | 901..997 | CDD:206637 | 31/95 (33%) | ||
Cadherin_repeat | 1006..1105 | CDD:206637 | 28/112 (25%) | ||
Cadherin_repeat | 1113..1210 | CDD:206637 | 21/97 (22%) | ||
Cadherin_repeat | 1225..1315 | CDD:206637 | 17/119 (14%) | ||
Cadherin_repeat | 1324..1421 | CDD:206637 | 18/145 (12%) | ||
Cadherin_repeat | 1433..1530 | CDD:206637 | 17/98 (17%) | ||
Cadherin_repeat | 1540..1637 | CDD:206637 | 18/119 (15%) | ||
Cadherin_repeat | 1645..1747 | CDD:206637 | 19/118 (16%) | ||
Cadherin_repeat | 1759..1854 | CDD:206637 | 18/97 (19%) | ||
Cadherin_repeat | 1862..1962 | CDD:206637 | 26/169 (15%) | ||
Cadherin_repeat | 1970..2072 | CDD:206637 | 26/111 (23%) | ||
Cadherin_repeat | 2080..2176 | CDD:206637 | 20/89 (22%) | ||
Cadherin_repeat | 2187..2296 | CDD:206637 | |||
Cadherin_repeat | 2308..2405 | CDD:206637 | |||
Cadherin_repeat | 2413..2511 | CDD:206637 | |||
Cadherin_repeat | 2520..2614 | CDD:206637 | |||
Cadherin_repeat | 2627..2725 | CDD:206637 | |||
Cadherin_repeat | 2742..2848 | CDD:206637 | |||
Cadherin_repeat | 2857..2958 | CDD:206637 | |||
CadN2 | NP_001036368.2 | Cadherin_repeat | 41..132 | CDD:206637 | 32/94 (34%) |
Cadherin_repeat | 140..248 | CDD:206637 | 33/112 (29%) | ||
Cadherin_repeat | 256..359 | CDD:206637 | 35/106 (33%) | ||
Cadherin_repeat | 379..481 | CDD:206637 | 27/107 (25%) | ||
Cadherin_repeat | 489..586 | CDD:206637 | 32/96 (33%) | ||
Cadherin_repeat | 594..703 | CDD:206637 | 28/111 (25%) | ||
Cadherin_repeat | 724..801 | CDD:206637 | 18/86 (21%) | ||
EGF_CA | 977..1010 | CDD:238011 | 0/32 (0%) | ||
LamG | 1013..1198 | CDD:238058 | 45/242 (19%) | ||
EGF_2 | <1233..1259 | CDD:285248 | 2/25 (8%) | ||
Laminin_G_2 | 1293..1428 | CDD:280389 | 31/172 (18%) | ||
EGF_CA | 1497..1535 | CDD:238011 | 8/37 (22%) | ||
Cadherin_C | 1583..1719 | CDD:279398 | 39/172 (23%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100175 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |