DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp9x and Usp47

DIOPT Version :9

Sequence 1:XP_006527649.1 Gene:Usp9x / 22284 MGIID:894681 Length:2575 Species:Mus musculus
Sequence 2:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster


Alignment Length:1641 Identity:334/1641 - (20%)
Similarity:551/1641 - (33%) Gaps:580/1641 - (35%)


- Green bases have known domain annotations that are detailed below.


Mouse  1051 LMPPDSTTIEKLRAICLDHAKLGESSLSPSLDSLFFGPSASQVLYLTEVV--------YALLMPA 1107
            |.|.|:..:..|.|:                        .||::|  ||.        :.:|:|:
  Fly    55 LQPHDNKDLVNLNAL------------------------ESQLMY--EVAGFEPQLKNHLILLPS 93

Mouse  1108 GAPLTDDSSDFQFHFLKSGGLPLVLSMLTRNNFLPNADMETRRGAYLNALKIAKLLLTAIGYGHV 1172
            |:...|.:..|:        ||:...::.:   :..:|.|             |....|.|....
  Fly    94 GSWDGDVTKRFE--------LPIKRVVVKK---VMKSDGE-------------KAKSPATGEKKK 134

Mouse  1173 RAVAEACQPGVEGVNPMTSVNQVTHDQAVVLQSALQSIPNPSSECMLRNVSVRLAQQISDEASRY 1237
            |.|.|..:......:...|..:.|.:.::. ::::.|..:|.....::..:.::::..|::|.|.
  Fly   135 RVVGEKTKKKPASGSSSPSKAKTTSEDSLA-KTSISSESSPEKTSKIKTTAAKISKPGSEKAPRA 198

Mouse  1238 MPDICVIRAIQKIIWTSGCGGLQLVFSPNEEVTKIYEKTNAGNEPDLEDEQVCCEALEVMTLCFA 1302
            .|:.|                       .|..|:|..|..:...|      |..:..:|.:.   
  Fly   199 SPEEC-----------------------PELSTEINSKNTSSESP------VAKKTAKVTSK--- 231

Mouse  1303 LIPTALDALSKEKAWQTFIIDLLLHCHSKTVRQVAQEQFFLMCTRCCMGHRPLLFFITLLFTVLG 1367
              || |:.||..|.             |..::::..|.                         :.
  Fly   232 --PT-LELLSPIKP-------------SSPIKELDCEP-------------------------VD 255

Mouse  1368 STARERAKHSGDYFTLLRHLLNYAYN--SNINVPNAEVLLNNEI--------DWLKRIRDDVKRT 1422
            :.::::.......:...|:|::...:  |::.:.:||.|.::::        ..|....|....|
  Fly   256 TLSKQQLSEQLQLYPQGRNLISPVDDAPSDLFISDAEQLSDDDLALGASASPTMLGPGYDYGAPT 320

Mouse  1423 GETGVEETILEGHLGVTKELLAFQTPEKKFHIGCEKGGANLIKELIDDFIFPA-SNVYLQYMRNG 1486
            |::.|     ||..|||       .|..   ||            .||..:|| ||.|.:.....
  Fly   321 GDSDV-----EGVTGVT-------DPST---IG------------TDDGTYPALSNFYRRKYGGD 358

Mouse  1487 ELPAEQAIPVCGSPATINAGFELLVALAVGCVRNLKQIVDSLTEMYYIGTAITTCEALTEWEYLP 1551
            ||.|.|.:...|:.                                ::.:|.|..||......| 
  Fly   359 ELRAWQRVNTTGAD--------------------------------FVSSATTETEAEARQASL- 390

Mouse  1552 PVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNGILAIEGTGSDVDDDMSGDEKQDNESNV 1616
              |||   |:|||.|...|||:||::|.|:|.|..||.:                          
  Fly   391 --GPR---GYVGLVNQAMTCYLNSLLQALFMTPEFRNAL-------------------------- 424

Mouse  1617 DPRDDVFGYPQQFEDKPPLSKTEDRKEYNIGVLRHLQVIFGHLAASRLQYY----VPRGF-WKQF 1676
                    |..:|::        |.:..||..  .||.:|.:|..|.....    :.|.| |...
  Fly   425 --------YRWEFDN--------DNEAKNIPY--QLQKLFLNLQTSPKAAVETTDLTRSFGWDST 471

Mouse  1677 RLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEES 1741
            ..|       :|||..|....:.|:|:...|......::|.:..|...|...|..|......|::
  Fly   472 EAW-------QQHDIQELCRVMFDALEHKFKNTKQANLISNLYEGKMNDYVKCLECNTEKTREDT 529

Mouse  1742 FTTLNVDIR------NHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAI 1800
            |..:.:.:|      .:.::.::|..:|:.:.|:|.|.|.||||.||.|..|.|..|..|.:|.:
  Fly   530 FLDIPLPVRPFGSSSAYGSIEEALRAFVQPETLDGNNQYLCEKCKKKCDAHKGLHFKSFPYILTL 594

Mouse  1801 QLKRFDYDWERECAIKFNDYFEFPRELDMEPY----------------------TVAGVAKLEGD 1843
            .|||||:|::....||.||...||:.|::..:                      |....:.:|.|
  Fly   595 HLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSGEQNSQLNGTVDDCSTADSGSAMEDD 659

Mouse  1844 NVNP-----------ESQLIQQNE-------QSESEKAGSTK--YRLVGVLVHSGQASGGHYYSY 1888
            |::.           |:.|..::|       .|:|.|.||..  |.|..:::|||.|||||||:|
  Fly   660 NLSSGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSGPYLYELFAIMIHSGSASGGHYYAY 724

Mouse  1889 IIQRNGGDGEKNRWYKFDDGDVTECKMDDDEEMKNQCFG---GEYMGEVFDHMMKRMSYRRQKRW 1950
            |     .|.:.|.|:.|:|.:||....:|.:    :.||   |.|....:....           
  Fly   725 I-----KDFDNNEWFCFNDQNVTSITQEDIQ----RSFGGPNGSYYSSAYTSST----------- 769

Mouse  1951 WNAYILFYERMDTIGHDDEVIRYISEIAITTRPHQIVMPSAIERSVRKQNVQFMHNRMQYSLEYF 2015
             |||:|.|.::|  ...:|::..:::           .|..|:..:.|     :|:.        
  Fly   770 -NAYMLMYRQVD--AKRNELVAKVAD-----------FPEHIKTLLPK-----LHSE-------- 807

Mouse  2016 QFMKKLLTCNGVYLNPPPGQDHLSPEAEEITMISIQL-----AARFLFTTGFHTKKIVRGSASDW 2075
                              .:..:|.....||:..:.|     ...:.:.......||.|...|..
  Fly   808 ------------------EETRVSRLGRHITVTDLALPDLYKPRVYFYNPSLKKMKITRVYVSQS 854

Mouse  2076 YDALCILLR--HSKNVRFWFA-----HNVLFNVS-NRFSEYLLECPS---AEVRGAFAKLIVFIA 2129
            ::...:|:.  ...||. .||     ..|.:|.| :...:.|..|..   .|:|.|....:.|:.
  Fly   855 FNINLVLMSAYEMLNVE-QFAPLSRCRLVAYNSSMDTIIQSLESCTDPALTELRAAQNYSLDFLL 918

Mouse  2130 HFSLQDGPCP----------------SPFASPGP---SSQAYDNLSLSDHLLRAVLNLLRREVSE 2175
            .:..:|....                |..|..||   .|.|.:. ..||.|.|::  .||..:||
  Fly   919 EYRAEDQEFEVYPPNGITWYVFKVDLSTMAMDGPFLVYSAARER-EASDVLRRSI--ALRLHISE 980

Mouse  2176 HGRHLQQYFNLFVMYANLGVAEKTQLLKLSVPATFMLVSLDEGPGP---------------PIKY 2225
                 ||:.              ...::.:||..|  ||.|..|.|               .|.|
  Fly   981 -----QQFL--------------LATVRATVPKAF--VSYDPHPTPEALQHLQNMANTQFKSITY 1024

Mouse  2226 QY--------AELGKLYSVVSQLIRCCN----VSSRMQSSI-NGNPSLPNPFG---------DPN 2268
            .|        |.|..|.....:.:.|.:    |.:.|.:.: .|:.|..|.:.         :| 
  Fly  1025 FYLNVPNTDAATLEMLGVPTVESVECASGGDVVDAAMMNGVAPGHMSSSNDYDWRRYKRDLVEP- 1088

Mouse  2269 LSQPIMPIQQNVVDILFVRTSYVKKIIEDCSNSDETVKLLRFCCWEN--------PQFSSTVLSE 2325
            :||| .|...:            :...||.|.||....|:.   .:|        .|.|||..|.
  Fly  1089 MSQP-SPSHGH------------ESNSEDSSLSDGDRTLVE---TDNMAHRGGGDSQVSSTSHSP 1137

Mouse  2326 LLWQVAYSYTYELRPYLDLLLQILLIEDSWQTH----RIH-----NALKGIPDDRDGLFDTIQRS 2381
                                 |:...||...:|    |:|     |......|..|.|.  :..|
  Fly  1138 ---------------------QLSSPEDEAASHDAMMRVHAYCNGNGSYAAADVVDPLL--LPTS 1179

Mouse  2382 KNH-YQKRAYQCIKCMVALFSSC------------PV-AYQILQGN----GDLKRKWTWAVEWLG 2428
            .|| :.....:|:. :|...||.            |. ||::|.|.    |..|:.    :|.|.
  Fly  1180 TNHFFYATKVECVD-VVGTGSSSGHQSDEEAQLRKPTRAYKLLVGTHMRMGAFKKH----IEQLI 1239

Mouse  2429 D------ELERRPYTGNPQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEEVKKA- 2486
            .      :|:|:        ..||.|    :|:.::...|....:..:.|.|..|  |:|.|.. 
  Fly  1240 QVPAAHFKLQRK--------HDNNLS----NNQNNSLVHLIEGETLTVELGKTLE--PDEFKAKI 1290

Mouse  2487 --TSLQEIEMEESKEP 2500
              ..|.:|:.|.||.|
  Fly  1291 HFLRLADIDNETSKLP 1306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp9xXP_006527649.1 Ubiquitin_like_fold <905..969 CDD:391949
peptidase_C19C 1560..1963 CDD:239124 119/458 (26%)
Usp47NP_523937.2 TEBP_beta <119..234 CDD:254188 26/163 (16%)
Rib_recp_KP_reg 122..265 CDD:282899 31/229 (14%)
peptidase_C19C 394..780 CDD:239124 119/457 (26%)
UCH 395..776 CDD:278850 117/452 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5077
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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