DRSC/TRiP Functional Genomics Resources

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Protein Alignment LNX2 and frm-5.2

DIOPT Version :10

Sequence 1:NP_699202.1 Gene:LNX2 / 222484 HGNCID:20421 Length:690 Species:Homo sapiens
Sequence 2:NP_001360605.1 Gene:frm-5.2 / 176821 WormBaseID:WBGene00021406 Length:1386 Species:Caenorhabditis elegans


Alignment Length:645 Identity:130/645 - (20%)
Similarity:225/645 - (34%) Gaps:188/645 - (29%)


- Green bases have known domain annotations that are detailed below.


Human   140 ASHRRVALERRKTSRTQAEIENENG----PTLLDPAGTLSPEADCLGTGAVPVERHLTS------ 194
            ||..|..::.|:...|   :.:||.    |.::....|:.|.....|....|....|.:      
 Worm   822 ASQHRWMMKMRQWKST---LRHENTIQAMPDVIVEGQTIPPAPIRQGLEESPPSTPLLASADQIF 883

Human   195 ASLSTWSEEPGLDNPA------------------------------FEESAGADTTQQPLSLPEG 229
            |.:|...|:|..:.||                              ||.   .|:|......|.|
 Worm   884 AKMSVSQEKPAANRPAELPPPAPSSKFAAQYDTVDEGIVCDSQAENFER---VDSTDNGNVTPRG 945

Human   230 ---EITTIEIHRSNPYIQLGISIVGGNETPLINIVIQEVYRDGVIARDGRLLAGDQILQVNNYNI 291
               :|..::    :|...||:::|.||...:..:.::.|..:|...:.| :..||:|:||...::
 Worm   946 MQFDILLVK----DPANGLGLTLVDGNLNGVPGVYVKLVADNGAGMKAG-VCVGDRIVQVGTESM 1005

Human   292 SNVSHNYARAV-LSQPCNTLHLTVL----------------------RERRFGN------RAHNH 327
            .  .|:...|| |.:.|......|:                      |::.|.:      .|.|.
 Worm  1006 E--GHDRLHAVELVRRCGQRVPMVIARLDGLIRHQKDVSAEMLASAGRKKSFTSSSGDLLNAPNR 1068

Human   328 SDSNSPREEIFQVALHKRD----------------SGEQL-------GIKLVRRTDEPGVFILDL 369
            ::..|......:.|.::|.                .|:.|       |:.|....:|.|.:.|..
 Worm  1069 TNGQSRTPPAPRKAANRRQRAVSDFGAIGDALPTLDGDNLINIKAISGLHLDESDEEKGEYRLPT 1133

Human   370 LEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPQPGNTIREAG 434
            .......:|..|.::.:       :.|...||      ..|||......||....:....|.|..
 Worm  1134 TSMYAFDRDDDLQASIK-------ESKKPAPE------PKSGELRKYRYARRSNLEIAEEIEEEA 1185

Human   435 NHSSSSQHHTPPPYYSRPSSHKDLTQCVTCQEKHITVKKEPHE--SLGMTVAGGRGSKSGELPI- 496
            ..||.....                  :...::.|.|:.:.:|  |||:.:|    |.||.:.| 
 Worm  1186 VESSDDDGQ------------------IDEGKRVIDVELDRNENGSLGVQIA----SLSGRVCIK 1228

Human   497 FVTSVP----PHGCLARDGRIKRGDVLLNINGIDLTNLSHSEAVAMLKASAASPAVALKALEVQI 557
            .:||.|    |.        |:.|||||.:|||.:....|.|.||||:...              
 Worm  1229 QLTSEPAISHPD--------IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGG-------------- 1271

Human   558 VEEATQNAEEQPSTFSENEYDASWSPSWVMWLGLPSTLHSCHDIVLRRSYLGSWGFSIVGGYEEN 622
             :......:..|..:|:..:.:|.|.|        :.|.|   ::|.:..:.:.|.|:.    :.
 Worm  1272 -DRVVLGVQRPPPAYSDQHHASSTSAS--------APLIS---VMLLKKPMATLGLSLA----KR 1320

Human   623 HTNQPFFIKTIVLGTPAYYDGRLKCGDMIVAVNGLSTVGMSHSALVPMLKEQRNKVTLTV 682
            ..:...||:.|...:.|..:|.|:.||.:|:::|....|.:.:.::..||..:..|.:||
 Worm  1321 TMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITV 1380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LNX2NP_699202.1 mRING-HC-C3HC3D_LNX2 45..89 CDD:319694
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..224 9/55 (16%)
NPXY motif 208..211 2/32 (6%)
PDZ1_LNX1_2-like 229..317 CDD:467165 22/113 (19%)
PDZ2_LNX1_2-like 338..420 CDD:467166 17/104 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 418..455 6/36 (17%)
PDZ3_LNX1_2-like 467..554 CDD:467167 30/93 (32%)
PDZ4_LNX1_2-like 599..687 CDD:467168 19/84 (23%)
frm-5.2NP_001360605.1 B41 510..712 CDD:214604
PH-like 708..837 CDD:473070 4/14 (29%)
PDZ_canonical 949..1029 CDD:467153 21/86 (24%)
PDZ 1200..1282 CDD:214570 30/108 (28%)
PDZ_canonical 1305..1381 CDD:467153 19/80 (24%)
Blue background indicates that the domain is not in the aligned region.

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