DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tubb5 and gammaTub23C

DIOPT Version :9

Sequence 1:NP_035785.1 Gene:Tubb5 / 22154 MGIID:107812 Length:444 Species:Mus musculus
Sequence 2:NP_476804.1 Gene:gammaTub23C / 33501 FlyBaseID:FBgn0260639 Length:475 Species:Drosophila melanogaster


Alignment Length:457 Identity:159/457 - (34%)
Similarity:263/457 - (57%) Gaps:32/457 - (7%)


- Green bases have known domain annotations that are detailed below.


Mouse     3 EIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVD 67
            ||:.:|.||||||||.:||:.:..||||.|:|.....::..|||..|::.:|....|:|||:|:|
  Fly     4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGLDRKDVFFYQADDDHYIPRAVLLD 68

Mouse    68 LEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCL 130
            |||..::::....:.:::.|:|....:  .|||||||.| |::|.:|.:.|.|::.:||:..|.|
  Fly    69 LEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSL 132

Mouse   131 QGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPS-PKVSDTVVEPYNATLSVHQLVE 194
            :||.|.||:.||||||||:.::.::.:.||.:::.||||.|: .::||.||:|||:.|::.:|..
  Fly   133 EGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTT 197

Mouse   195 NTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVP 259
            ..|....:||.||..|....|.:..|::..:|:|||..||..||.||:|..:|.:|..|...::|
  Fly   198 AADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIP 262

Mouse   260 FPRLHFFMPGFAPLTSRG---SQQ---YRALTVPELTQQVFDAKNMMAACDP---RHGRYLTVAA 315
            .|:|||.|.|:.||||..   :||   .|..||.::.:::...||||.:..|   .|..|:::..
  Fly   263 TPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGPDKSNHHCYISILN 327

Mouse   316 VFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAVTFIGNST 372
            :.:|.:...:|.:.:..::::..:.|:.|.|.:::.|:....|        .||.:|     |.|
  Fly   328 IIQGEVDPTQVHKSLQRIRDRKMAQFIPWGPTSIQVALSRSSPYVQSNHRVSGLMLA-----NHT 387

Mouse   373 AIQELFKRISEQFTAMFRRKAFLHWYTGEGM---DEMEFTEAESNMNDLVSEYQQYQDATAEEEE 434
            :|..||:|...|:..:.:|.|||..:..|.:   |..|..|:...::.||   |:|:.||.|:..
  Fly   388 SICSLFERALNQYDKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLV---QEYEAATREDYM 449

Mouse   435 DF 436
            .|
  Fly   450 QF 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tubb5NP_035785.1 PLN00220 1..429 CDD:215107 155/448 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 423..444 6/14 (43%)
gammaTub23CNP_476804.1 PLN00222 1..451 CDD:215108 158/455 (35%)
gamma_tubulin 4..440 CDD:276957 154/444 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.