DRSC/TRiP Functional Genomics Resources

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Protein Alignment HNRNPA3 and sqd

DIOPT Version :10

Sequence 1:NP_919223.1 Gene:HNRNPA3 / 220988 HGNCID:24941 Length:378 Species:Homo sapiens
Sequence 2:NP_731825.1 Gene:sqd / 41666 FlyBaseID:FBgn0263396 Length:344 Species:Drosophila melanogaster


Alignment Length:377 Identity:138/377 - (36%)
Similarity:178/377 - (47%) Gaps:69/377 - (18%)


- Green bases have known domain annotations that are detailed below.


Human     7 PGRPQPDSGRRRRRRGEEGHDPKEPEQL---RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR 68
            ||....|:|......|...:......|.   ||||:||||:|||:..||:||.|:|.:....|..
  Fly    25 PGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKT 89

Human    69 DPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGI 133
            ||||.|||||.|:.::..|.:|....|..|.::.:.|:||:|.:|..           ||||||:
  Fly    90 DPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG-----------KIFVGGL 143

Human   134 KEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 198
            ..:..:..::.||.::|.|..:|:..|:|..:::||.|:|||....|..::......|.|...:|
  Fly   144 TTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDV 208

Human   199 KKALSKQEMQSAGSQRG--RGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
            |:|..|.|.|..|..||  |||..|                |||| :||||||.....| :||||
  Fly   209 KRATPKPENQMMGGMRGGPRGGMRG----------------GRGG-YGGRGGYNNQWDG-QGSYG 255

Human   262 GGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGG-GGGYDGYNEGGNFGGGNYGG 325
            |..|||                   ||||.||.|....||.|.| ..|||||..||.|.|..|||
  Fly   256 GYGGGY-------------------GGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGG 301

Human   326 GGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRR 377
            ||.               |.|.||..|.|..|.|.|||..:||...|.|.|:
  Fly   302 GGG---------------GNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGGRQ 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HNRNPA3NP_919223.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34 5/26 (19%)
RRM1_hnRNPA_like 36..113 CDD:409992 35/76 (46%)
RRM2_hnRNPA3 126..205 CDD:409996 25/78 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 204..225 10/22 (45%)
HnRNPA1 331..>347 CDD:463312 1/15 (7%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 336..378 16/42 (38%)
sqdNP_731825.1 RRM1_hnRNPA_hnRNPD_like 58..129 CDD:409763 31/70 (44%)
RRM2_hnRNPD_like 137..211 CDD:240775 24/73 (33%)

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