Protein Alignment Traf1 and Traf4

DIOPT Version :9

• Sequence 1: NP_001313530.1
• Gene: Traf1 / 22029
• MGIID: 101836
• Length: 409
• Species: Mus musculus
• Sequence 2: NP_477416.1
• Gene: Traf4 / 33638
• FlyBaseID: FBgn0026319
• Length: 486
• Species: Drosophila melanogaster
• Alignment Length: 434
• Identity: 100/434 - (23%)
• Similarity: 162/434 - (37%)
• Gaps: 152/434 - (35%)

Mouse     3 SSSAPDENEFQFGCPPAPCQDPSEPRVLCCTACLSENLRDDEDRI--CPKCR----ADN--LHPV 59
            |.:..:|:....|..|..|:.....|:|.....|.:: :|...|:  |..|:    ||.  ||..
  Fly   172 SGAGLEEHNGSCGQEPVYCEAKCGQRILRGRMTLHKS-KDCAKRLRRCAHCQREFSADTLPLHAA 235

Mouse    60 S-PGSPLT---------------QEKVHSDVAEAEIMCPFAGVGCSFKGSPQSMQEHEATSQSSH 108
            . |.:||.               :..:..:.....:.|.|...||.|||..|.::.|..::.::|
  Fly   236 QCPRAPLACPQRCDAGPIPRGELEAHLRDECQSLAVSCSFKEAGCRFKGPRQMLEAHLESNAAAH 300

Mouse   109 LYLLLAVLKEWKSSPGSNLGSAPMALERNLSELQLQAAVEATGDLEVDCYRAPCCESQEELALQH 173
            |.|::|:        .|..|.....|:..:|:|.:
  Fly   301 LSLMVAL--------SSRQGQQIQMLKSAVSKLSI------------------------------ 327

Mouse   174 LVKEKLLAQLEEKLRVFANIVAVLNKEVEASHLALAASIHQSQLDREHILSLEQRVVELQQTLAQ 238
                                                                             
  Fly   328 ----------------------------------------------------------------- 327

Mouse   239 KDQVLGKLEHSLRLMEEASFDGTFLWKITNVTKRCHESVCGRTVSLFSPAFYTAKYGYKLCLRLY 303
                              ::.||.|||||:.:.:..|:.....:.|.||.|||::|||||...::
  Fly   328 ------------------NYTGTLLWKITDWSAKMAEARGKDGLELVSPPFYTSQYGYKLQASMF 374

Mouse   304 LNGDGSGKKTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLD---QNNREHAIDAFRPDLSSASFQ 365
            |||:|.|:.||:|::|.::.|||||||.|||.:.:||.|.:   |:.:....::|.||.:..:||
  Fly   375 LNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTLFEQGAQSGQGGVAESFVPDPTWENFQ 439

Mouse   366 RPQSETN-VASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVDTS 408
            ||.:|.: :..|.|.|.....|.|  ..::|.||:||:..||.|
  Fly   440 RPSNEPDQLGFGFPRFISHELLHS--RPFIKGDTVFLRVKVDPS 481

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Traf1	NP_001313530.1	SMC_prok_B	<126..257	CDD:274008	4/130 (3%)
		TRAF_BIRC3_bd	180..237	CDD:374713	0/56 (0%)
		MATH_TRAF1	260..406	CDD:239748	60/149 (40%)
Traf4	NP_477416.1	PLN03086	<109..206	CDD:178635	7/33 (21%)
		zf-TRAF	233..292	CDD:424248	12/58 (21%)
		MATH_TRAF4	331..479	CDD:239750	60/149 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D391991at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3301
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.950