DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tpo and cd

DIOPT Version :9

Sequence 1:XP_011242158.1 Gene:Tpo / 22018 MGIID:98813 Length:915 Species:Mus musculus
Sequence 2:NP_651081.1 Gene:cd / 42681 FlyBaseID:FBgn0263986 Length:830 Species:Drosophila melanogaster


Alignment Length:622 Identity:212/622 - (34%)
Similarity:318/622 - (51%) Gaps:80/622 - (12%)


- Green bases have known domain annotations that are detailed below.


Mouse   144 KYRPITGACNNRDHPR-WGASNTALARWLPPVYEDGFSQPKGWNPNFLYHGFPLPPVREVTRHLI 207
            :||..||.|||:.||| :|||.....|.:.|.|.||.:.|:     ..:|| .|||.|:|:   :
  Fly   217 RYRRSTGVCNNKQHPRTYGASMVPYRRMVSPDYADGIAAPR-----VSHHG-RLPPARQVS---L 272

Mouse   208 QVSNEAVTEDDQYSDFLPVWGQYIDHDIALTPQSTSTAAFWGGVDC--QLTCENQNPCFPIQL-- 268
            ::...:...|..::..|.|:||::||||..|..:||...  ..:||  ..|.|....|:|:.:  
  Fly   273 KIHRSSYETDSNFTVMLAVFGQFMDHDITATSLTTSQEG--ESIDCCVAATREQHPECYPVDILP 335

Mouse   269 --PSNSSGTTACLPFYRSSAACGTGDQGALFGNLSAANPRQQMNGLTSFLDASTVYGSSPGVEKQ 331
              |.......:|:.|.||:.| .||..|          ||.|:|..|:|:|||.|||:....:.|
  Fly   336 DDPYYKQYNISCMNFVRSAPA-PTGRFG----------PRMQLNQATAFIDASVVYGNLEQRQNQ 389

Mouse   332 LRNWSSSAGLLRVNTLHLDAGRAYLPFATAACAPEPGTPRTNRTP----CFLAGDGRASEVPALA 392
            ||::.:  |.||:  ...|.||..||.::   .|..|..|...|.    ||.:||.||:|...|.
  Fly   390 LRSFIN--GSLRM--FVTDDGRQLLPISS---NPADGCNRVQMTRLGKYCFESGDDRANENLLLT 447

Mouse   393 AVHTLWLREHNRLASAFKAINKHWSANTAYQEARKVVGALHQIITMRDYIPKILGPD-------- 449
            ::|.||.|.||.||...:..|.||.....||||||::||....||..:::|.:||.:        
  Fly   448 SMHLLWARHHNYLARQLQEQNPHWEDERLYQEARKILGAQMAHITYNEFLPVLLGKNISEAKGLL 512

Mouse   450 AFRQYVGPYEGYNPTVNPTVSNIFSTAAFRFGHATVHPLVRRLNTDFQEHTELPRLQLRDVFFRP 514
            ..:..:...:.|:|.|:|:::|.|:.|||||.| |:.|.:..::.|   ::....::|..:.|.|
  Fly   513 PAKHNLNAPDTYDPEVDPSIANCFAAAAFRFAH-TLLPGLFNISRD---NSTPEAIELHKMLFNP 573

Mouse   515 WRLIQEGGLDPIVRGLLARAAKLQVQGQLMNEELTERLFVLSNVGT---------LDLASLNLQR 570
            :.|..|.|:|..:. ..|....:||. :..:.|:|::||    .||         |||.|||:||
  Fly   574 FSLWAEHGIDHALM-TAANTPVMQVD-RFFSLEVTQKLF----EGTAEDRVPLCGLDLVSLNIQR 632

Mouse   571 GRDHGLPDYNEWREFCGLSRLETPAELNKAIANRSMVNKIMDLYKHADNIDVWLGGLAEKFLPGA 635
            |||||:|.|..:|..|.|..::|..|:::||.|.:: :.|..:|:...::||:.|.|:|..|.||
  Fly   633 GRDHGIPSYPVFRRHCRLPTVDTWEEMSQAIDNATL-DSIRQIYESPQDVDVYTGALSEPPLDGA 696

Mouse   636 RTGPLFACIIGKQMKALRDGDRFWWE---NTNVFTDAQRQELEKHSLPRVICDNT-GLTRV---P 693
            ..|||.:|::..|...|:.||..|:|   ....||.||..|:.|.||..:||.|: |:|||   .
  Fly   697 IFGPLLSCMVSDQFLRLKLGDSHWYERKMGPQKFTKAQLAEIYKTSLAAIICRNSDGITRVREHV 761

Mouse   694 VDAFRIGKFPQDFESCEDIPS--MDLELWRE-TFPQD 727
            :...|.|..|.  ..|:|:..  .:.|.|.| ..|||
  Fly   762 MQRLRDGGNPH--VDCQDLEGFHFNFEPWSEKQQPQD 796

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TpoXP_011242158.1 thyroid_peroxidase 161..722 CDD:188657 198/596 (33%)
CCP 730..783 CDD:153056
EGF_CA 784..826 CDD:311536
cdNP_651081.1 An_peroxidase 218..755 CDD:281139 198/576 (34%)
peroxinectin_like 364..750 CDD:188655 142/403 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 310 1.000 Inparanoid score I2576
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.870

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