DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ABCA3 and snu

DIOPT Version :9

Sequence 1:NP_001080.2 Gene:ABCA3 / 21 HGNCID:33 Length:1704 Species:Homo sapiens
Sequence 2:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster


Alignment Length:857 Identity:182/857 - (21%)
Similarity:306/857 - (35%) Gaps:262/857 - (30%)


- Green bases have known domain annotations that are detailed below.


Human   523 PEDLVAGIKIKHLSKVFRVGNKDRA--AVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP 585
            |.:..|.:.::|..|.:  |.|..|  .:.:||:.:.:|.|..|||.:|.||||.||.:.     
  Fly    67 PRNTQAAVSVRHAFKAY--GKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIV----- 124

Human   586 TSGRAYISGYEI--------SQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCP 642
              ||.|:...||        ::......|.:|..||...|:...::.|.:.::..:.|:..::..
  Fly   125 --GRRYMDAGEIFVLGGKPGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEIL 187

Human   643 EEVKQMLHIIGLEDKWNSRSRF---LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIW 704
            |.::.:|:.:.|.    |..|.   ||||.:|::|..:||:...::|||||||.|:|.:.|::||
  Fly   188 ERLQFLLNFLDLP----SEKRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIW 248

Human   705 DLLQR--QKSDRTIVLTTHFMDEADLLGDRIAIMAKGEL-------------QCCG-SSLFLK-- 751
            :.|..  :...:|:::|||:::|| .....|.:|..|.|             :|.. ..:|||  
  Fly   249 NHLVHITKAGQKTVIITTHYIEEA-RQAHTIGLMRSGHLLAEESPSVLLSIYKCISLEEVFLKLS 312

Human   752 ----QK----------------------------------YGAGYHM--------------TLVK 764
                ||                                  .|..:|.              ||.:
  Fly   313 RIQSQKGDVTHVNFSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKEVLINDSNGSIYTLNQ 377

Human   765 EPHCNPEDISQLVHHHVPNATLESSAGAELSFILPRESTHRFEGLFAK-LEKKQKELGIASFGAS 828
            ||:..|..    ..::.||.  |.|.....|.:....|..:...|..| :.:..:.:|:..|..:
  Fly   378 EPYSPPPS----RRNNNPND--EESCQDCYSNLCKITSKGKIRALLTKNMLRMWRNVGVMLFIFA 436

Human   829 ITTMEEVF--LRVGKLVDSSMDIQAIQLPALQYQHE---RRASDWAVDSNLCGAMDPSDG----- 883
            :..|:.:.  |.:|:      |.|.:.|..:..:..   |....|            .||     
  Fly   437 LPVMQVILFCLAIGR------DPQGLNLAIVNGEMNDTVRENCYW------------EDGCHFKN 483

Human   884 IGALIEEERTAVKLNTGLALHCQQFWAMF--LKKAAYSWREWKMVAAQVLVPLTCVTLALLAINY 946
            :|.     |....|||.:.   :.::...  .|:|......|..|                   |
  Fly   484 LGC-----RYLSHLNTSVV---KTYYEDLDDAKEAVRKGTAWGAV-------------------Y 521

Human   947 SSELFDDPML-RLTLGEYG--RTVVPFSVP-----GTSQLGQQLSEHLKDA--------LQAEGQ 995
            .||.|.|..: |..||...  .|:....|.     ...|:|..|:..::.|        |...|.
  Fly   522 ISENFTDAFIARANLGRDSDDETIDSSEVKVWLDMSNQQIGVMLNRDIQLAFRDFAMGLLGQCGS 586

Human   996 EPREVLGDLEEFLIFRASVEGGGFNERCLVAASFRDVGERTVVNAL--FNNQAYHSPATALAVVD 1058
            .|:  |||:.  :.||..:.|       .:..||.|.....|:..:  |...|..|.|..:...:
  Fly   587 NPK--LGDVP--IQFRDPIYG-------TMNPSFTDFVAPGVILTIVFFLAVALTSSALIIERTE 640

Human  1059 NLL---------------------FKLLCGPHASIVVSNFPQPRSALQAAKDQFNEGRKGFDIAL 1102
            .||                     |.::||....:::        .:.......|.|...:.|.|
  Fly   641 GLLDRSWVAGVSPFEILFSHVITQFVVMCGQTTLVLI--------FMLVVFGVTNNGDLFWVIVL 697

Human  1103 NLLFAMAFLASTFSILAVSERAVQAKHVQFVSGVHVASFWLSALLWDL---------ISFLIPSL 1158
            .||..|..:...|.|.:|.|  ::...:|...|....:..||.::|.:         ||..:|..
  Fly   698 TLLQGMCGMCFGFLISSVCE--LERNAIQLALGSFYPTLLLSGVIWPIEGMPVVLRYISLCLPLT 760

Human  1159 LLLVVFKAFDVRAFTRDGHMADTLLLLLLYGWAIIPLMYLMNFFFLGAATAYTRLTIFNILSGIA 1223
            |                  ...:|..:|..||||     |.:..::|..:.         ||.|.
  Fly   761 L------------------ATSSLRSILTRGWAI-----LESDVYIGYVST---------LSWIV 793

Human  1224 TFLMVTIMRIPA 1235
            .||::|::.:.|
  Fly   794 GFLVLTLLVLRA 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCA3NP_001080.2 ABC2_membrane_3 <271..469 CDD:289468
CcmA 530..839 CDD:224054 92/394 (23%)
ABC_subfamily_A 530..751 CDD:213230 69/249 (28%)
ABC2_membrane_3 923..1261 CDD:289468 73/361 (20%)
ABC_subfamily_A 1381..1602 CDD:213230
drrA 1397..1692 CDD:130256
snuNP_651628.1 LolD 73..290 CDD:224059 67/230 (29%)
ABC_DR_subfamily_A 74..286 CDD:213197 66/225 (29%)
pip_yhgE_Nterm 427..>474 CDD:276270 9/52 (17%)
ABC2_membrane_3 429..801 CDD:289468 91/469 (19%)
ABC2_membrane 601..769 CDD:279410 35/202 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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