DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sptb and Actn

DIOPT Version :9

Sequence 1:NP_038703.3 Gene:Sptb / 20741 MGIID:98387 Length:2329 Species:Mus musculus
Sequence 2:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster


Alignment Length:1015 Identity:324/1015 - (31%)
Similarity:489/1015 - (48%) Gaps:244/1015 - (24%)


- Green bases have known domain annotations that are detailed below.


Mouse    40 FERSRIKALADEREVVQKKTFTKWVNSHLARVSCRISDLYKDLRDGRMLIKLLEVLSGEMLPRPT 104
            :||..:...|.|::  ||||||.|.||||.:....|.::.:|.|:|..|:.||||:|||.||:|.
  Fly    22 WEREGLLDPAWEKQ--QKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPD 84

Mouse   105 KGKMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLVLGLIWTIILRFQIQDIVVQTQEG 169
            :||||.|.:.||:|||.|:..:.|||.::|:.:|||||.::.||:||||||||.||||.|     
  Fly    85 RGKMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV----- 144

Mouse   170 RETRSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHKHRPDLIDFDKLKDSNARHNL 234
             |..:||:.||||||.|||.|.:|||.||..|:||||||.||||:|||||||:.||...|...||
  Fly   145 -EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENL 208

Mouse   235 EHAFDVAERQLGIIPLLDPEDVF-TENPDEKSIITYVVAFYHYFSKMKVLA-------------- 284
            ..||||||:.|.|..:|||:|:. |..|||::|:|||..:||.|...:.:.              
  Fly   209 NTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPEPTRQYTY 273

Mouse   285 --------VEGKRVGKVIDHAIETEKMIEKYSGLASDLLTWIEQTISVLNSRKFANSLSGVQQQL 341
                    ....|:.||:....|.|:::|:|..||||||.||.:|:..||||:..|||:|||::|
  Fly   274 VPNNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGVQKKL 338

Mouse   342 QAFSTYRTVEKPPKFQEKGNLEVLLFTIQSRMRANNQKVYTPHDGKLVSDINRAWESLEEAEYQR 406
            :.:.|||...|||:.::|..||....|:|:::|.:|:..|.|.:||.||||:.:|:.||.||...
  Fly   339 EEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNSWKGLELAEKAF 403

Mouse   407 ELALRSELIRQEKLEQLARRFDRKAAMRETWL-NENQRLVTQDNFGYDLAAVEAAKKKHEAIETD 470
            |..|.:|.:|.|:||.||::|..||...|.|. .:.:.|.:||.....|..::|.||||||.|:|
  Fly   404 EEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELKALKKKHEAFESD 468

Mouse   471 TAAYEERVKALEDLAQELEKENYHDQKRIIARKDNILRLWSYLQELLRSRRQRL-EATLALQKLF 534
            .||:::||:.:..:||||....|||...:.||...|...|..|..|.:.||..| ||...|:|: 
  Fly   469 LAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTALDEAERILEKI- 532

Mouse   535 QDMLH---------SIDWMDEIKAHILSAEFGKHLLEVEDLLQKHKLMEADIAIQGDKVKAITAA 590
             |:||         ..:|:|..:..::.......:.|::.|:|.|           |:.|    |
  Fly   533 -DILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAH-----------DQFK----A 581

Mouse   591 TLQFAEGKGYQPCDPQVIQDRVSHLEQCFSELSNMAAGRKAQLEQSKRLWKFFWEMDEAESWIKE 655
            ||..|:.:                    |:.:.|:                    :.|.||.:|:
  Fly   582 TLGEADKE--------------------FNLIVNL--------------------VREVESIVKQ 606

Mouse   656 K------EQIYSSLDYGKDLT------SVLILQRKHKAFEDELRGLDAHLKQIFQEADDMVAQKQ 708
            .      |..|::|. ..|:|      ..|:.|| .:...:|||.         |:.::|: ::|
  Fly   607 HQIPGGLENPYTTLT-ANDMTRKWSDVRQLVPQR-DQTLANELRK---------QQNNEML-RRQ 659

Mouse   709 FGH------PQIETRVKEVSAQWDHLKELAAFRKKDLQDAENFFQFQGDADDLKAWLQDAHRLLS 767
            |..      |.||.::..|:|....|                    ||..:|      ..|||  
  Fly   660 FAEKANIVGPWIERQMDAVTAIGMGL--------------------QGSLED------QLHRL-- 696

Mouse   768 GEDVGQDEGATRALGKKHKEFLEELEESRGVMEHLEHQAQGFPEEFRDSPDVTNR-----LQALR 827
                .:.|.|..|    :|..:||||:.        |||      .::|....||     ::.||
  Fly   697 ----KEYEQAVYA----YKPNIEELEKI--------HQA------VQESMIFENRYTNYTMETLR 739

Mouse   828 KLYQQVLTQAELRGHKLQEALDLYTVFGESDACELWMTEKGKWLDQMDIPNTLEDLEVVQHRFDI 892
            ..::|:||......::::..:               :|...|.:.|       |.|...:..|:.
  Fly   740 VGWEQLLTSINRNINEVENQI---------------LTRDSKGISQ-------EQLNEFRSSFNH 782

Mouse   893 LD---------QEMKTLMAQIDGVNLAANNLVESGHPRSGEVKQYQ------DRLNKRWQAFQAV 942
            .|         :|.|:.:..: |.::        |..|.|:: .:|      |..|..:..|.|.
  Fly   783 FDKNRTGRLSPEEFKSCLVSL-GYSI--------GKDRQGDL-DFQRILAVVDPNNTGYVHFDAF 837

Mouse   943 VS-EQREAVDSALRVNNYCVDCEETSKWIMDKTKVVESTK 981
            :. ..||:.|:            :|::.::|..:::.:.|
  Fly   838 LDFMTRESTDT------------DTAEQVIDSFRILAADK 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SptbNP_038703.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30
Actin-binding 2..275 126/235 (54%)
CH 55..158 CDD:237981 55/102 (54%)
CH 177..273 CDD:214479 58/96 (60%)
Spectrin 302..411 CDD:278843 49/108 (45%)
Spectrin 1. /evidence=ECO:0000255 303..411 49/107 (46%)
Spectrin 422..526 CDD:278843 40/105 (38%)
Spectrin 3. /evidence=ECO:0000255 529..635 19/114 (17%)
SPEC 530..742 CDD:238103 44/238 (18%)
Spectrin 4. /evidence=ECO:0000255 638..741 25/120 (21%)
SPEC 641..848 CDD:238103 50/229 (22%)
Spectrin 5. /evidence=ECO:0000255 744..846 25/106 (24%)
SPEC 745..954 CDD:238103 46/229 (20%)
Spectrin 6. /evidence=ECO:0000255 853..950 20/112 (18%)
Spectrin 7. /evidence=ECO:0000255 958..1058 3/24 (13%)
SPEC 962..1168 CDD:238103 3/20 (15%)
Spectrin 8. /evidence=ECO:0000255 1062..1165
SPEC 1170..1379 CDD:238103
Spectrin 9. /evidence=ECO:0000255 1170..1258
Spectrin 10. /evidence=ECO:0000255 1275..1376
SPEC 1385..1475 CDD:197544
Spectrin 11. /evidence=ECO:0000255 1389..1463
Spectrin 12. /evidence=ECO:0000255 1481..1582
SPEC 1485..1690 CDD:238103
Spectrin 13. /evidence=ECO:0000255 1584..1688
SPEC 1691..1901 CDD:238103
SPEC 1798..2005 CDD:238103
Spectrin 15. /evidence=ECO:0000255 1798..1899
Spectrin 16. /evidence=ECO:0000255 1906..2006
Spectrin 17. /evidence=ECO:0000255 2013..2073
Spectrin 2013..>2070 CDD:278843
PH 2180..2288 CDD:278594
PH_beta_spectrin 2182..2287 CDD:269975
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 54/105 (51%)
CH_ACTN_rpt2 139..252 CDD:409065 68/118 (58%)
SPEC 302..525 CDD:238103 95/222 (43%)
SPEC 420..647 CDD:238103 73/285 (26%)
SPEC 538..760 CDD:238103 64/338 (19%)
EFh 775..842 CDD:238008 13/76 (17%)
EFhand_Ca_insen 847..913 CDD:400872 4/31 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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