DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox4 and Sox100B

DIOPT Version :9

Sequence 1:NP_033264.2 Gene:Sox4 / 20677 MGIID:98366 Length:440 Species:Mus musculus
Sequence 2:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster


Alignment Length:463 Identity:126/463 - (27%)
Similarity:200/463 - (43%) Gaps:113/463 - (24%)


- Green bases have known domain annotations that are detailed below.


Mouse    43 GGKADDP-------------SW------CKTPSG----HIKRPMNAFMVWSQIERRKIMEQSPDM 84
            ||:.:|.             .|      .|.|:.    ||||||||||||:|..||.:.:|.|.:
  Fly    38 GGRKEDERITTAVMKVLEGYDWNLVQASAKAPTDRKKEHIKRPMNAFMVWAQAARRVMSKQYPHL 102

Mouse    85 HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKK----VKSGNAGAGSAA 145
            .|:|:||.|||.||.||||||.||::.||:||:.|..::|||||:||:|    :.|..:|.|.: 
  Fly   103 QNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKYQPRRKKARVLPSQQSGEGGS- 166

Mouse   146 TAKPGEKGDKVA--GSSGHAGSSHAGG--GAGGSSKPAPKKSCGPKVAGSSVGK------PHAKL 200
               ||.:....|  ||||...||::.|  .||..:..|...||...::.::||.      .:...
  Fly   167 ---PGPEMTLSATMGSSGKPRSSNSNGQRRAGKGNAAADLGSCASTISHANVGSNSSDVFSNEAF 228

Mouse   201 VPAGGSKAAASFSPEQAALLPLGEPTAVYKVRTPSAATPAASS---SPSSALATPAKHPADKKVK 262
            :.:..|..|||..  :.:|:..|..:......:.|:.||.|:.   :||:|.|:.|.:|:     
  Fly   229 MKSLNSACAASLM--EQSLIETGLDSPCSTASSMSSLTPPATPYNVAPSNAKASAANNPS----- 286

Mouse   263 RVYLFGSLGASASPVGGLGASADPSDPLGLYEDGGPGCSPDGR-SLSGRSSAASSPAASRSPAD- 325
              .|...|   :.||...|      |..|:..:.|......|. :..|:|:...|.|....... 
  Fly   287 --LLLRQL---SEPVANAG------DGYGVLLEAGREYVAIGEVNYQGQSAGVQSGAEGGGAGQE 340

Mouse   326 ---------HRGYASLRAASPA---PSSAPSHAS------SSLSSSSSSSSGSSSSDDE------ 366
                     :.||...|.:.||   |::....|:      .:|.:|.:.:...:::|.:      
  Fly   341 MDFLENINGYGGYTGSRVSYPAYSYPANGGHFATEEQQQQQALQASEALNYKPAAADIDPKEIDQ 405

Mouse   367 -FEDDLLDL------------------NPSSNFESMSLGSFSSSSALDRDL-----DFNFEPGSG 407
             |.|.:|.:                  :|..| .|.||.|..||::..:.:     ...:.|.:.
  Fly   406 YFMDQMLPMTQHHHPHHTHPLHHPLHHSPPLN-SSASLSSACSSASSQQPVAEYYEHLGYSPAAS 469

Mouse   408 SHFEFPDY 415
            |..:.|::
  Fly   470 SASQNPNF 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox4NP_033264.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58 6/37 (16%)
SOX-TCF_HMG-box 58..129 CDD:238684 43/70 (61%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..211 26/96 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 234..258 10/26 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 272..382 26/154 (17%)
Sox100BNP_651839.1 SOX-TCF_HMG-box 76..146 CDD:238684 42/69 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.