DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox3 and Sox15

DIOPT Version :9

Sequence 1:NP_033263.2 Gene:Sox3 / 20675 MGIID:98365 Length:450 Species:Mus musculus
Sequence 2:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster


Alignment Length:368 Identity:106/368 - (28%)
Similarity:168/368 - (45%) Gaps:95/368 - (25%)


- Green bases have known domain annotations that are detailed below.


Mouse   132 GGGGGGGSDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDE 196
            ||.....:.:.|::|||||||||::.:|:|:|.|||.:||:::||.||..|:.||..::||:::|
  Fly   203 GGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEE 267

Mouse   197 AKRLRAVHMKEYPDYKYRPRRKTKTLL-------KKDKYSLP----GG-------LLPPGAAAAA 243
            |:|||.:||.|:|:|||||||:.::.|       |:...|.|    ||       ..||.|.|::
  Fly   268 AERLRVIHMTEHPNYKYRPRRRKQSKLRAMQPGGKEQSESSPNPGTGGSKSNPKLATPPLATASS 332

Mouse   244 AAAAAAAAA-----------SSPVGVGQR--LDTY--THVNGWANGAYSLVQEQLGYAQPPSM-- 291
            :.......:           |:|.|:.::  ..||  :.|:.::|...:...|.|....||::  
  Fly   333 SYTTPTDESTCNSTNQNHGQSTPGGLYEQPLKPTYSPSSVDCYSNADSTEQIESLAANCPPALLN 397

Mouse   292 -SSP---------------PPPPALPQMHRYDMAGLQYSPMMPPGAQSYMNAAAAAAAASGYGGM 340
             |||               .|.|:.....|.:.  |..|.....|:||...:.....||: | .:
  Fly   398 ESSPTGGGYDNSLLLKKLTKPSPSRAAKSRQEK--LAKSEEKNKGSQSQGQSQQGIYAAT-Y-PL 458

Mouse   341 APSAAAAAAAA-------------YGQQ------PATAAAAAAAAAAM-----SLGPMGSVVKSE 381
            ||::.|..||.             :|..      |..:.:....:.:|     :|....:||.|.
  Fly   459 APTSVAVVAARGMYVTCNNRGLLDHGHSVKGTFYPPVSVSEDDNSTSMRNSISALQQHCNVVTST 523

Mouse   382 PSS-----PPPAIASH--SQRACLGDLRDMISM-------YLP 410
            |||     |...::|:  |.....|:||  :||       |||
  Fly   524 PSSSGGTMPTSEMSSYTVSMADNCGNLR--LSMNELSGNEYLP 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox3NP_033263.2 SOX-TCF_HMG-box 143..214 CDD:238684 38/70 (54%)
SOXp 213..306 CDD:289133 31/143 (22%)
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 38/70 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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