Sequence 1: | NP_033262.2 | Gene: | Sox18 / 20672 | MGIID: | 103559 | Length: | 377 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_651839.1 | Gene: | Sox100B / 45039 | FlyBaseID: | FBgn0024288 | Length: | 529 | Species: | Drosophila melanogaster |
Alignment Length: | 404 | Identity: | 112/404 - (27%) |
---|---|---|---|
Similarity: | 153/404 - (37%) | Gaps: | 132/404 - (32%) |
- Green bases have known domain annotations that are detailed below.
Mouse 79 IRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERLRVQHLRDH 143
Mouse 144 PNYKYRPRRKKQARKVRRLE--------PGLLLPGLVQPSAPPEA-------------FAAASGS 187
Mouse 188 ARSFRELPTLGAEFD----------------------------GLGLPTPERSPLDGLEPGEASF 224
Mouse 225 FPPPLAPEDCALRAFRAPYAPELARDPSFC--------------YGAPLAEALRTAPPAAPL--- 272
Mouse 273 ---AGL---------------------YYGTLGTPGPFPNPLSP----------PPESPSLEGTE 303
Mouse 304 QL--EPTADLWADVDLTEFDQY-----LNCSRTRPDATTLPYHVALAKLGPRAMSCPEESSLISA 361
Mouse 362 LSDASS----AVYY 371 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sox18 | NP_033262.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..76 | ||
SOX-TCF_HMG-box | 78..149 | CDD:238684 | 38/69 (55%) | ||
Interaction with DNA. /evidence=ECO:0000269|PubMed:26939885 | 81..94 | 10/12 (83%) | |||
Interaction with DNA. /evidence=ECO:0000269|PubMed:26939885 | 105..117 | 7/11 (64%) | |||
Important for transcriptional activation. /evidence=ECO:0000269|PubMed:10742113, ECO:0000269|PubMed:7651823 | 160..225 | 16/113 (14%) | |||
Sox_C_TAD | 187..375 | CDD:288887 | 59/275 (21%) | ||
Sox100B | NP_651839.1 | SOX-TCF_HMG-box | 76..146 | CDD:238684 | 37/68 (54%) |
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG0527 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000028 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |