DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Slc22a12 and CarT

DIOPT Version :9

Sequence 1:NP_033229.3 Gene:Slc22a12 / 20521 MGIID:1195269 Length:553 Species:Mus musculus
Sequence 2:NP_610052.1 Gene:CarT / 35334 FlyBaseID:FBgn0032879 Length:674 Species:Drosophila melanogaster


Alignment Length:579 Identity:158/579 - (27%)
Similarity:242/579 - (41%) Gaps:106/579 - (18%)


- Green bases have known domain annotations that are detailed below.


Mouse     5 ELLDRVGGLGRFQLFQTVALVTPI---LWVTTQNMLENFSAAVP-HHRCWVP-LLDNSTSQ---A 61
            :||..:|..|::|......:..|.   ......|.|  |.|..| .:.|.:| |||....|   .
  Fly    38 DLLPTIGEFGKYQKLLVFGICLPACIPCGFCAFNQL--FMADTPDDYWCRIPELLDLPLEQRKSL 100

Mouse    62 SIPGDLGPDVLLAVSIPPGPDQQPHQCLRFRQPQWQLTESNA--TATNWSDAATEP---CEDGWV 121
            |||.:|..|.|:.           .:|..:.....||.||..  ..|.....|:.|   |..||.
  Fly   101 SIPKELDNDELVY-----------SKCYTYGVNWTQLLESGEEDDLTTMEPNASWPLIKCPQGWE 154

Mouse   122 YDHSTFRSTIVTTWDLVCNSQALRPMAQSIFLAGILVGAAVCGHASDRFGRRRVLTWSYLLVSVS 186
            |:.|...|:||..:||||:......:..:....|..||..:.|..:||.|||    .||.:    
  Fly   155 YNTSVVWSSIVIDFDLVCDQDIYPTIGLAALNTGGPVGVYLFGLLNDRGGRR----LSYFV---- 211

Mouse   187 GTAAAFMPTFPLYCLFRFLLASAVAGVMMNTASLLMEWTSAQGS--------------PLVMTLN 237
                         |     ||:.:||.:|.:.|... ||.| ||              |.:::|.
  Fly   212 -------------C-----LATLLAGSLMTSLSKDF-WTWA-GSRVIVGLTIPAVYQIPFIISLE 256

Mouse   238 ALG--------------FSFGQVLTGSVAYGVRSWRMLQLAVSAPFFLFFVYSWWLPESARWLIT 288
            .:|              ::.|.:|...|.|..|.|..|....|.||:.:|:|.:.:|||.|||:.
  Fly   257 LVGENYRSFVTVMTCTFYTSGIMLLSGVTYLERDWVRLSYITSLPFYAYFLYMFVMPESPRWLLM 321

Mouse   289 VGKLDQGLQELQRVAAVNRRKAEGDTLTMEVLRSAMEEEPSRDK--------AGASLGTLLHTPG 345
            .|:|::.|:.|:|:|.||.|:..      |.:...:|.:..|||        |...|..|..||.
  Fly   322 RGRLEEALKILERMAKVNGREFP------EAVHLKLEAQIRRDKLKKQKKKMANVGLADLCRTPN 380

Mouse   346 LRHRTIISMLCWFA-----FGFTFYGLALDLQALGSNIFLLQALIGIVDFPVKTGSLLLISRLGR 405
            :|.:||:..|.|||     .|.::||     .|||:|.::...|..:|:.|........:...||
  Fly   381 MRLKTILITLSWFANETVYLGLSYYG-----PALGTNQYVSFFLSAVVELPSYLCCWYFMDTWGR 440

Mouse   406 RLCQVSFLVLPGLCILSNILVPHGMGVLRSALAVLGLGCLGGAFTCITIFSSELFPTVIRMTAVG 470
            |......::|.|:..:..:::|.........|.::....|..:|..|..|:.||:||.:|...:|
  Fly   441 RWPLSLSMILGGVACVITVMLPDDAVDETLVLYLVSKALLSASFLIIYPFAGELYPTQVRGIGIG 505

Mouse   471 LCQVAARGGAMLGPLVRLLGVYGSWMPLLVYGVVPVLSGLAALLLPETKNLPLPDTIQD 529
            ........|.:..|.:..||.....:||::.|.:.:|.|:..|.||||.:..||.||::
  Fly   506 ASSYIGGLGLIGIPFITYLGKDNLKLPLVIMGFLSMLGGMTGLRLPETLHHRLPQTIEE 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Slc22a12NP_033229.3 2A0119 11..526 CDD:273328 154/568 (27%)
MFS 147..516 CDD:119392 107/409 (26%)
CarTNP_610052.1 2A0119 44..561 CDD:273328 154/568 (27%)
MFS 182..551 CDD:119392 107/407 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57756
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24064
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X24
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

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