DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tra2b and Saf-B

DIOPT Version :10

Sequence 1:NP_033212.1 Gene:Tra2b / 20462 MGIID:106016 Length:288 Species:Mus musculus
Sequence 2:NP_733041.2 Gene:Saf-B / 42958 FlyBaseID:FBgn0039229 Length:928 Species:Drosophila melanogaster


Alignment Length:320 Identity:70/320 - (21%)
Similarity:116/320 - (36%) Gaps:73/320 - (22%)


- Green bases have known domain annotations that are detailed below.


Mouse    13 ESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRS 77
            |..::..:...:..|..::....:|..|:||...:|..:| |..:....:|:......:.|.:.|
  Fly   220 EKSNSKDADKKNDDGARSKKRDEKSGDKKDSSEQKSSGKS-SNQKDDKEKSTAAPGGATSSTASS 283

Mouse    78 HRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYG 142
            ...|:|.|.|.......::|::..:|..|:            |.|.|||..|...||:.:|||:|
  Fly   284 AAGSKSGSGSSAGNGTGANSNNKQATLSRN------------LWVSGLSTLTRASDLKAIFSKFG 336

Mouse   143 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS--------ITKRP 199
            .:....:|.:.::..:|.:.:|...:..||....|..:..||.||.|.|:.:        .:|..
  Fly   337 KVIGAKVVTNTRTPGTRCYGYVTMSSSADASRCIENLHRTELHGRIISVERTKNEIGGSLNSKEG 401

Mouse   200 HTPTPGIYMGRPTYGSSRRRDYYDRGYDRGY---------DDRDYYSRSYRGGGGGG-------- 247
            ....||      ..|:.::.|  |.|...|.         ||:       :||.|.|        
  Fly   402 KGKAPG------DAGNKKKED--DSGKKSGSGKGSSSNSGDDK-------KGGDGNGDSKSVGGD 451

Mouse   248 -------------------GGWRAAQDRDQIYRRRSPSPYYS-RGGYRSRSRSRSYSPRR 287
                               |...|:|||.:..|.||...... |.|...|...|....|:
  Fly   452 LKRDGKESNRARSRRNDDRGKSLASQDRPRHDRERSAKGSQDHRSGRNPRDVDREIQQRQ 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tra2bNP_033212.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..114 19/100 (19%)
RRM_TRA2 117..196 CDD:409798 24/86 (28%)
Linker 193..230 7/44 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..225 6/28 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..288 17/74 (23%)
Saf-BNP_733041.2 SAP 11..42 CDD:460424
2A1904 <16..>270 CDD:273344 9/50 (18%)
RRM_SF 311..386 CDD:473069 24/86 (28%)
SWIRM-assoc_1 <588..618 CDD:465142
Blue background indicates that the domain is not in the aligned region.

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