DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema6b and Sema2a

DIOPT Version :9

Sequence 1:NP_001123928.1 Gene:Sema6b / 20359 MGIID:1202889 Length:886 Species:Mus musculus
Sequence 2:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster


Alignment Length:670 Identity:203/670 - (30%)
Similarity:323/670 - (48%) Gaps:128/670 - (19%)


- Green bases have known domain annotations that are detailed below.


Mouse    11 PALSFFLLLLLGVTYGLFPEEPPPLSVAPRDYLSHY------PVFVGSGPGRLT----AAEGAED 65
            |.|:..|||...|            |....||.:.:      |...|:..|...    .|:...:
  Fly     8 PLLALLLLLCSSV------------SETAADYENTWNFYYERPCCTGNDQGNNNYGKHGADHVRE 60

Mouse    66 LN----IQRVLRVNR---TLFIGDRDNLYQVELEPSTSTELRYQRKLTWRSNPSDIDVCRMKGK- 122
            .|    ..|...:|.   ||::|..|.:::|.|:..:|:... :..:.......|:..|..||| 
  Fly    61 FNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCN-RDVINLEPTRDDVVSCVSKGKS 124

Mouse   123 QEGECRNFVKVLLLRDE-STLFVCGSNAFNP----ICAN--YSMDTLQLLGDSISGMARCPYDPK 180
            |..:|:|.|:|:...|: ..|:|||:||.||    |.||  :...:..::|..: |:|:|||||.
  Fly   125 QIFDCKNHVRVIQSMDQGDRLYVCGTNAHNPKDYVIYANLTHLPRSEYVIGVGL-GIAKCPYDPL 188

Mouse   181 HANVALFSD-----GM--LFTATVTDFLAIDAVIYRS--------LGDRPTLRTVKHDSKWFKEP 230
            ..:.|::.:     |:  |::.|..:|...|.||:|:        ..:....||:|:||||..:|
  Fly   189 DNSTAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWLDKP 253

Mouse   231 YFVHAVEWGSHVYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSV 295
            .||.:.:.|.:|||||||.|:|:....|.|.||:|||||.||||. .:|...|.::||||||||:
  Fly   254 NFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGK-NLLAHNWATYLKARLNCSI 317

Mouse   296 PGDSHFYFNVLQAVTGVVSLGGRPVILAVFSTPSNSIPGSAVCAFDMNQVAAVFEGRFREQKSPE 360
            .|:..||||.:|:|..:.|...|  ..|.|:|.:|.:.|||||:|.:|::.|.|.|:|:||.|..
  Fly   318 SGEFPFYFNEIQSVYQLPSDKSR--FFATFTTSTNGLIGSAVCSFHINEIQAAFNGKFKEQSSSN 380

Mouse   361 SIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPDEILNFVKTHPLMDEAVPSLGHSP-WIVRTLM 424
            |.|.||...:||.||||.|.      |.:|.|||.:|||:::|||||:||....::| :..|.|:
  Fly   381 SAWLPVLNSRVPEPRPGTCV------NDTSNLPDTVLNFIRSHPLMDKAVNHEHNNPVYYKRDLV 439

Mouse   425 RHQLT--RVAVDVGAGPWGNQ--TIVFLGSEAGTVLKFL--VKPNASVSGTTGPSIFLEEFETYR 483
            ..:|.  ::.:|:     .||  .:.::|:..|.:.|.:  .:...|:|.      .|:.||.  
  Fly   440 FTKLVVDKIRIDI-----LNQEYIVYYVGTNLGRIYKIVQYYRNGESLSK------LLDIFEV-- 491

Mouse   484 PDRCGRPSSAGEWGQRLLSLELDAASGGLLAAFPRCVVRVPVARC-QLYSGCMKNCIGSQDPYCG 547
                 .|:.|      :..:|:......|.......:.::.:|.| :.|..|.: |:  :|||||
  Fly   492 -----APNEA------IQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFR-CV--RDPYCG 542

Mouse   548 WAPDGSCIFLRPGTSATFE----QDVSGASTSGLGDCTGLLRASLSDDRAGLVSVNLLVTSS--- 605
            |..:.:       |...:|    |||:. .||.:.|             :.::...::||..   
  Fly   543 WDKEAN-------TCRPYELDLLQDVAN-ETSDICD-------------SSVLKKKIVVTYGQSV 586

Mouse   606 -VAAFV-VGAVVSGFSVGWF 623
             :..|| :..|:....|.|:
  Fly   587 HLGCFVKIPEVLKNEQVTWY 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema6bNP_001123928.1 Sema_6B 58..526 CDD:200528 165/508 (32%)
PSI 527..573 CDD:214655 15/50 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 655..677
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 697..731
PHA03269 708..>875 CDD:165527
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 761..886
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 163/491 (33%)
Ig_Semaphorin_C 573..664 CDD:143180 7/34 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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