DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5b and Sema1b

DIOPT Version :9

Sequence 1:XP_006521932.1 Gene:Sema5b / 20357 MGIID:107555 Length:1122 Species:Mus musculus
Sequence 2:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster


Alignment Length:595 Identity:207/595 - (34%)
Similarity:308/595 - (51%) Gaps:88/595 - (14%)


- Green bases have known domain annotations that are detailed below.


Mouse     6 PLALSLLLSSLTLLVSHLSSSQDIASESSSEQQMCTRREHPIVAFEDLKPWVFNFTYPGVRDFSQ 70
            |:.|.:.||.||::...:   .|:..:..::|.            :.|..::.|.|     |:.:
  Fly    18 PMILLITLSGLTIVAGWM---PDVKPDLQTKQD------------KVLAHFIGNST-----DYFK 62

Mouse    71 LALDPSRNQLIVGARNYLFRLSLANVSLLQATEWASSEDTRRSCQSKGKTEEECQNYVRVLIV-S 134
            : ||.:...::|||::.::.:||..:..:...||.|::..|..|..|||.|.:|.||:||..: .
  Fly    63 I-LDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLRVYALRP 126

Mouse   135 GRKVFMCGTNAFSPVC--------SSRQVGN----------LSRTIEKINGVARCPYDPRHNSTA 181
            ..:|.:||||::.|.|        ||.:.|:          :||.:| ..|:  |||.|.||||.
  Fly   127 NGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVE-AQGL--CPYSPAHNSTY 188

Mouse   182 VISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAFDIGLFAYFFLREN 246
            .. :.|.||:|||.||||.||.|||.     .|||.||:.|.||:|:||.|.:...:..||.||.
  Fly   189 AF-ADGHLYSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAIERNGYVLFFFREL 247

Mouse   247 AVE-HDCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSAFHLPE- 309
            ::| .:.|:.||||||||||||.||.:....:||:|:|||||||.|||.|||::|:|:...:.| 
  Fly   248 SMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQAISPIVES 312

Mouse   310 --QDLIYGVFTTNVNSIAASAVCAFNLSAISKAFNGPFRYQENPRAAWLPI-ANPIPNFQCGTLP 371
              :.|||.||||:||:|..|||||||:..|..||:|.|:.|::.::.|||: ...:|..:.|...
  Fly   313 GSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPGQCV 377

Mouse   372 ETGPNENLTERSLQDAQRLFLMSEAVQPVTPEPCVTQDSVRFSHLVVDLV---QAKD---TLYHV 430
            |  .:..||..::...:...||.|||..|...|.:|:  |...|.:..:.   |.|.   ..|.|
  Fly   378 E--DSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTK--VNLHHRLTAIAVHPQVKSLSGAYYDV 438

Mouse   431 LYIGTESGTILKAL--------STASRSLRGCYLEELHVLPPGRLEPLRSLRILHSARALFVGLS 487
            :|.||:.|.:.|.:        ||..| |:...:.|:.|||.|  .|:|.|.|..|..:|.|...
  Fly   439 IYSGTDDGKVTKFINILSTHPNSTVDR-LKTVVISEMQVLPLG--TPIRELVISTSKNSLVVVSD 500

Mouse   488 DRVLRVPLERCSAYHSQGACLGARDPYCGWDGKRQLCSTLEDSSN---MSLWIQNITT------- 542
            ..::.|||..||.......||..:||.|.||.:...|..|..|.:   ...::|::.:       
  Fly   501 GSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYLQSLNSTKKAAAL 565

Mouse   543 -CPVRNVTRD 551
             ||  ::.||
  Fly   566 LCP--HIPRD 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5bXP_006521932.1 Sema 60..496 CDD:387663 179/473 (38%)
PSI 497..544 CDD:366642 13/57 (23%)
TSP1 609..662 CDD:214559
TSP1 667..742 CDD:214559
TSP1 827..879 CDD:214559
TSP1 884..936 CDD:214559
TSP_1 940..981 CDD:387593
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 181/477 (38%)
PSI 510..>537 CDD:214655 9/26 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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