DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema5b and Sema1a

DIOPT Version :9

Sequence 1:XP_006521932.1 Gene:Sema5b / 20357 MGIID:107555 Length:1122 Species:Mus musculus
Sequence 2:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster


Alignment Length:1046 Identity:309/1046 - (29%)
Similarity:448/1046 - (42%) Gaps:246/1046 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse    51 EDLKPWVFNFTYPGVRDFSQLALDPSRNQLIVGARNYLFRLSLANVSLLQATEWASSEDTRRSCQ 115
            ||:..:|.|   ..|.|..:| :....|.|::||||.:|.||:.::...|...|.|.||..:.|.
  Fly    82 EDVLKFVGN---ESVVDHFKL-VTKDGNSLLIGARNTVFNLSIHDLVEQQRLVWTSPEDDTKMCL 142

Mouse   116 SKGKTEEECQNYVRVLIV-SGRKVFMCGTNAFSPVCSSRQVGNLSRTIEKI-NGVARCPYDPRHN 178
            .|||.||.||||:|:::| |..::|:||||:|.|:|::..:.:.:.|:|.. ||.|.||||||||
  Fly   143 VKGKDEEACQNYIRIMVVPSPGRLFVCGTNSFRPMCNTYIISDSNYTLEATKNGQAVCPYDPRHN 207

Mouse   179 STAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAFDIGLFAYFFL 243
            ||:|: :..|||:.||.||||.||.|||.     ||:|.||:|..||.||||::|..|.|.|||.
  Fly   208 STSVL-ADNELYSGTVADFSGSDPIIYRE-----PLQTEQYDSLSLNAPNFVSSFTQGDFVYFFF 266

Mouse   244 RENAVEH-DCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSAFHL 307
            ||.|||. :||:.:|||||||||.|.||.....:.||:|:|:|||||.||:.|||:||:|||.:|
  Fly   267 RETAVEFINCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNL 331

Mouse   308 PE-------QDLIYGVFTTNVNSIAASAVCAFNLSAISKAFNGPFRYQENPRAAWLPIAN-PIPN 364
            .|       ..||||||.|..|||..||||||.|..|:..|.|.|:.|....:.|||:.| .:|:
  Fly   332 VEGQYGSMSSKLIYGVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPD 396

Mouse   365 FQCGTLPETGPNENLTERSLQDAQRLF-----LMSEAVQPVTPEPCVTQDSV--RFSHLVVDLVQ 422
                  |..|...| ..|:|.|....|     ||.|.|.....:|.:.:.|.  ||:.:.|| .|
  Fly   397 ------PRPGSCHN-DSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVD-AQ 453

Mouse   423 AK---DTLYHVLYIGTESGTILKALSTASR----SLRGCYLEELHVLPPGRLEPLRSLRILHSAR 480
            .|   ...|.|:::||:.|.|:|:::..|.    .:....:||:.||.  :.||:|:|.|:.:.:
  Fly   454 IKTPGGKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVIEEIDVLT--KSEPIRNLEIVRTMQ 516

Mouse   481 ------------ALFVGLSDRVLRVPLERC--SAYHSQGACLGARDPYCGWDGKRQLCST----- 526
                        .|.:....:|:.:.|.||  ....|...|:..:||||.||.....|.:     
  Fly   517 YDQPKDGSYDDGKLIIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSHGAPR 581

Mouse   527 -LEDSSNMSLWIQNITT-----CPVRNV-TRDGGFGPWSPWK-PCEHLDGDNSGSCLCRARSCDS 583
             ||:    :.:.||:.|     ||...: ::|...|....:: ..:.||.        |.:|.|.
  Fly   582 WLEE----NYFYQNVATGQHAACPSGKINSKDANAGEQKGFRNDMDLLDS--------RRQSKDQ 634

Mouse   584 PRPRCGGLECL--------GPSI--HIANCSRNGAWTAWSSWAQCSTSCGIGFQVRQRSCSNPAP 638
                    |.:        ||.|  .|.|..........:..|....|..:||            
  Fly   635 --------EIIDNIDKNFEGPQISADIINAQYTVETLVMAVLAGSIFSLLVGF------------ 679

Mouse   639 RHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSNNCGGGVQSRRRSCENGNSCP-GCGV 702
             ..|..|..:..::.  ::|.|.|...:                   ......:|.||.| .|.:
  Fly   680 -FTGYFCGRRCHKDE--DDNLPYPDTEY-------------------EYFEQRQNVNSFPSSCRI 722

Mouse   703 VRSRGWGAGSGETYSPGGVGGSEATLTP--KEFKTCNPEACPE--------VRRNTPWTPWLPVN 757
            .:                    |..|.|  :|.....|...|:        ..:||...|  |::
  Fly   723 QQ--------------------EPKLLPQVEEVTYAEPVLLPQPPPPNKMHSPKNTLRKP--PMH 765

Mouse   758 VTQGGARQEQRFRFTCRAPLPDPHGLQFGKRRTETRTCPADGTGACDTDALVEDLLRSGSTSPHT 822
            ....|...|..|:|.     ||.:..|...|       ..|..|...:..::.|..|.|.     
  Fly   766 QMHQGPNSETLFQFQ-----PDGYNTQQSYR-------GRDNFGTLRSHQVMGDNYRRGD----- 813

Mouse   823 LNGGWATWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGL-------PCVGDAAEYQDCNPQACPV 880
               |::|              .|..|:...|...||..|       |..|...:::..:||....
  Fly   814 ---GFST--------------TRSVKKAVNNTNTRNRSLGRARRQPPRHGIVTQHRSNSPQQQQQ 861

Mouse   881 RGAWSCWTAWSQCSASCGGGHYQRTRSCTSPA-----PSPGED--ICLGLHTEEALCSTQACP-- 936
            :         ||...|..|.....:.|.:|||     |||.|.  .|..::.: .:|:|::.|  
  Fly   862 Q---------SQQPHSSSGSSPVMSNSSSSPAPPSSSPSPQESPKNCSYIYRDXLICNTKSMPLI 917

Mouse   937 EGWSLWSEWGVCTEDGAQSRSRSCEELLPGPGACVGNSSQSRPCP-----YSE-IPV--ILPASS 993
            :..|          ..||...:|....||.||.....:......|     |:: :||  :.|.|.
  Fly   918 QAQS----------THAQPHPQSHPHPLPPPGPTTPPAQPRARSPMIGRTYAKSMPVTPVQPQSP 972

Mouse   994 VEETTS 999
            :.||.|
  Fly   973 LAETPS 978

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema5bXP_006521932.1 Sema 60..496 CDD:387663 191/472 (40%)
PSI 497..544 CDD:366642 16/59 (27%)
TSP1 609..662 CDD:214559 8/52 (15%)
TSP1 667..742 CDD:214559 10/77 (13%)
TSP1 827..879 CDD:214559 11/58 (19%)
TSP1 884..936 CDD:214559 15/58 (26%)
TSP_1 940..981 CDD:387593 8/40 (20%)
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 192/471 (41%)
PSI 545..>579 CDD:214655 11/33 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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