DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema4f and Sema1b

DIOPT Version :9

Sequence 1:NP_035480.3 Gene:Sema4f / 20355 MGIID:1340055 Length:777 Species:Mus musculus
Sequence 2:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster


Alignment Length:821 Identity:219/821 - (26%)
Similarity:349/821 - (42%) Gaps:177/821 - (21%)


- Green bases have known domain annotations that are detailed below.


Mouse     5 AERPRPGPRPPPVSLFPPPSSLLLLLLAMLSAPVCGRVPRSVPRTSLPISEADSYLTRFAAPHTY 69
            :.:.||......|:..|   .:||:.|:.|:. |.|.:|...|...   ::.|..|..|....| 
  Fly     2 SSKSRPSSAAMLVNAIP---MILLITLSGLTI-VAGWMPDVKPDLQ---TKQDKVLAHFIGNST- 58

Mouse    70 NYSALLVDPASHTLYVGARDSIFALTLPFSGEKP-RRIDWMVPETHRQNCRKKGKKEDECHNFIQ 133
            :|..:| |.....:.|||:|.|:.::|  :|.|. .|::|...:..|:.|..|||.|.:|||:::
  Fly    59 DYFKIL-DHNDEFVLVGAKDVIYNVSL--NGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLR 120

Mouse   134 ILAIANASHLLTCGTFAFDPKC---GVIDVSSFQ------------QVERLESGRGKCPFEPAQR 183
            :.|:.....:|.|||.::.|:|   ..::|||.:            :|.|....:|.||:.||..
  Fly   121 VYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHN 185

Mouse   184 SAAVMAGGVLYTATVKNFLGTEPIISRAVGRAEDWIRTETLS-SWLNAPAFVAAMVLSPAEWGDE 247
            |....|.|.||:|||.:|.|.:|:|.|      :.:|||... ..||.|.||.|:          
  Fly   186 STYAFADGHLYSATVADFSGGDPLIYR------ENLRTEQYDLKQLNQPDFVGAI---------- 234

Mouse   248 DGDDEIFFFFTETSRVLDSYERIKVPRVARVCAGDLGGRKTLQQRWTTFLKADLLCPGPEHGRAS 312
            :.:..:.|||.|.|..:.::.:....||||||..|.||..:..:.||:||||.|.|..|  |...
  Fly   235 ERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVP--GEFP 297

Mouse   313 GVLQDMTELRPQPGAGT-PLFYGIFSSQWEGAAISAVCAFRPQDIRAVLNGPFRELKHDCNRGLP 376
            ....::..:.|...:|: .|.|.:|::.......||||||...||.|..:|.|:..|...:..||
  Fly   298 FYFDEIQAISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLP 362

Mouse   377 VMDNEVPQPRPGECITNNMKFQQFGSSLSLPDRVLTFIRDHPLMDRPVFPADGRPLLVTTDTAY- 440
            |...:||:||||:|:.:         |.:|....:.||::||||:..|....|||||...:..: 
  Fly   363 VEREQVPKPRPGQCVED---------SRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHR 418

Mouse   441 -LRVVAH-RVTSLSGKEYDVLYLGTEDGHLHRAVRIGAQLS-------------VLEDLALFPET 490
             ..:..| :|.||||..|||:|.||:||.:.:.:.|   ||             |:.::.:.|..
  Fly   419 LTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINI---LSTHPNSTVDRLKTVVISEMQVLPLG 480

Mouse   491 QPVESMKL--YHDWLLVGSHTEVTQVNTSNCGRLQSCSECILAQDPVCAWSFRLDACVAHA-GEH 552
            .|:..:.:  ..:.|:|.|...:..|...:|..:..|..|:..|||:|||..:...|...| .:|
  Fly   481 TPIRELVISTSKNSLVVVSDGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQH 545

Mouse   553 ----RGMVQDIESADVSS--LCPKEPGEHPVVFEVPVATVGHVVLPCSPS-------SAWASCVW 604
                :..:|.:.|...::  |||..|.:.|     ...||..|.:...|:       |...|...
  Fly   546 KFGTKTYLQSLNSTKKAAALLCPHIPRDAP-----GAETVSFVTMAPPPTEEQKLLYSNVGSSQG 605

Mouse   605 HQPS-----------GVTSLT---------------PRR-----DGLEVVVTPGAM--------- 629
            :|||           |:..:|               |::     |.::...||..|         
  Fly   606 NQPSLEQQPTGGDDFGLNKITLTSMDPDDIMPNLNDPQKSTASVDEIKYASTPSFMLLTTIVFFT 670

Mouse   630 ---GAYACECQEGGAARVVAAYSLVWGSQRGPANRAHTVVGAGLVGFFLGVLAASLTLLLIGRRQ 691
               |..|..|       .|.|.|.:..:|...::|.|                       .|:..
  Fly   671 FLVGGIAGIC-------CVKAKSRLMEAQMDESHRNH-----------------------FGKPM 705

Mouse   692 QRRRQRELLARDKVGLDLGAPPSGTTSYSQDPPSPSPEDER 732
            |.:.|       ..|.|:.. ..|:.:|:....:|:.:.|:
  Fly   706 QFKHQ-------NTGKDINL-LMGSNAYTTTQKTPNLDLEK 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema4fNP_035480.3 Sema_4F 58..517 CDD:200522 153/494 (31%)
PSI 518..569 CDD:279745 15/57 (26%)
Ig 576..655 CDD:299845 23/128 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 703..742 6/30 (20%)
PDZ-binding. /evidence=ECO:0000269|PubMed:11483650 775..777
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 151/489 (31%)
PSI 510..>537 CDD:214655 9/26 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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