DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema4d and Sema1b

DIOPT Version :9

Sequence 1:NP_001268809.1 Gene:Sema4d / 20354 MGIID:109244 Length:861 Species:Mus musculus
Sequence 2:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster


Alignment Length:834 Identity:224/834 - (26%)
Similarity:347/834 - (41%) Gaps:205/834 - (24%)


- Green bases have known domain annotations that are detailed below.


Mouse    49 NYSALLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR 113
            :|..:|...|:..| |||::.::.| :||..::...:.|..::..:..||.||| .:.:|.||:|
  Fly    59 DYFKILDHNDEFVL-VGAKDVIYNV-SLNGLKEIARLEWHSTDADRELCALKGK-HEWDCHNYLR 120

Mouse   114 VLQPLSSTSLYVCGTNAFQPTCDHL--------------NLTSFKF-LGKSEDGKGRCPFDPAHS 163
            |.....:..:.:||||:::|.|.|.              :..:.:: :.:..:.:|.||:.|||:
  Fly   121 VYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHN 185

Mouse   164 YTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTE-YAIPWLNEPSFVFADVIQKSPDGPEGE 227
            .|.....|.|||.|..:|.|.:|:|.|.:    |||| |.:..||:|.||          |....
  Fly   186 STYAFADGHLYSATVADFSGGDPLIYREN----LRTEQYDLKQLNQPDFV----------GAIER 236

Mouse   228 DDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKP-DSGLVFN 291
            :..|.|||.|:|:|.....|.:..|||||||.|:||..:..|.|||||||||.||.| :....|:
  Fly   237 NGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYFD 301

Mouse   292 ILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWV 356
            .:|.:..:...|.|. :.|||||..:|.:..|||||:.:..:.|.|. |:: :|....|||  |:
  Fly   302 EIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFD-GEF-KSQKDSQSH--WL 361

Mouse   357 RY-NGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNY 420
            .. ...||.||||.|::         .|..|....:.|:|:||||:::|..:..||.|.|.::::
  Fly   362 PVEREQVPKPRPGQCVE---------DSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHH 417

Mouse   421 --TQIVV-DRTQALDGTFYDVMFISTDRGALHKAV-ILTKEVH---------VIEETQLFRDSEP 472
              |.|.| .:.::|.|.:|||::..||.|.:.|.: ||:...:         ||.|.|:.....|
  Fly   418 RLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTP 482

Mouse   473 VLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEA 537
            :..|::|:.|....|.  |:..:|..||..|.....|..|:..:||.|||......|..|     
  Fly   483 IRELVISTSKNSLVVV--SDGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHEC
KNL----- 540

Mouse   538 SSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPKYG 602
                                  :.:||.|   ||   |.:.:|         .|...|||:    
  Fly   541 ----------------------ATSQHKF---GT---KTYLQS---------LNSTKKAAA---- 564

Mouse   603 FVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLE-------VKMVPRTPPSPTSED 660
                                               ||..|:..       |..|...|| ||.|.
  Fly   565 -----------------------------------LLCPHIPRDAPGAETVSFVTMAPP-PTEEQ 593

Mouse   661 AQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSG----------TSCEPKMVINT 715
            .....:       |.|:||:.|             :|..:.:.|          ||.:|..::..
  Fly   594 KLLYSN-------VGSSQGNQP-------------SLEQQPTGGDDFGLNKITLTSMDPDDIMPN 638

Mouse   716 V--PQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPG-QCLKFRSALLLGKKTP 777
            :  ||..:.....:|.:.....|.|...:|..||.        |.:.| .|:|.:|.|:      
  Fly   639 LNDPQKSTASVDEIKYASTPSFMLLTTIVFFTFLV--------GGIAGICCVKAKSRLM------ 689

Mouse   778 KSDFSDLEQSVKETLVEPGSFSQQNGDHPKPAL--DTGYETEQDTITSKVPTDR 829
               .:.:::|.:....:|..|..||.......|  ...|.|.|.|....:..||
  Fly   690 ---EAQMDESHRNHFGKPMQFKHQNTGKDINLLMGSNAYTTTQKTPNLDLEKDR 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema4dNP_001268809.1 Sema_4D 31..501 CDD:200520 156/482 (32%)
PSI 503..548 CDD:396154 10/44 (23%)
Ig 563..646 CDD:416386 14/89 (16%)
Ig strand B 569..577 CDD:409353 3/7 (43%)
Ig strand C 583..589 CDD:409353 0/5 (0%)
Ig strand C' 591..594 CDD:409353 1/2 (50%)
Ig strand D 600..604 CDD:409353 0/3 (0%)
Ig strand E 607..614 CDD:409353 0/6 (0%)
Ig strand F 620..629 CDD:409353 0/8 (0%)
Ig strand G 633..646 CDD:409353 3/19 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 649..709 15/69 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 793..839 11/39 (28%)
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 157/484 (32%)
PSI 510..>537 CDD:214655 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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