Sequence 1: | NP_001268809.1 | Gene: | Sema4d / 20354 | MGIID: | 109244 | Length: | 861 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001163178.1 | Gene: | Sema1b / 37007 | FlyBaseID: | FBgn0016059 | Length: | 770 | Species: | Drosophila melanogaster |
Alignment Length: | 834 | Identity: | 224/834 - (26%) |
---|---|---|---|
Similarity: | 347/834 - (41%) | Gaps: | 205/834 - (24%) |
- Green bases have known domain annotations that are detailed below.
Mouse 49 NYSALLMSEDKDTLYVGAREAVFAVNALNISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIR 113
Mouse 114 VLQPLSSTSLYVCGTNAFQPTCDHL--------------NLTSFKF-LGKSEDGKGRCPFDPAHS 163
Mouse 164 YTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTE-YAIPWLNEPSFVFADVIQKSPDGPEGE 227
Mouse 228 DDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKP-DSGLVFN 291
Mouse 292 ILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLATVEAVFSRGKYMQSATVEQSHTKWV 356
Mouse 357 RY-NGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNY 420
Mouse 421 --TQIVV-DRTQALDGTFYDVMFISTDRGALHKAV-ILTKEVH---------VIEETQLFRDSEP 472
Mouse 473 VLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGSCEDCVLARDPYCAWSPAIKACVTLHQEEA 537
Mouse 538 SSRGWIQDMSGDTSSCLDKSKESFNQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAASPKYG 602
Mouse 603 FVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHVLE-------VKMVPRTPPSPTSED 660
Mouse 661 AQTEGSKITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSG----------TSCEPKMVINT 715
Mouse 716 V--PQLHSEKTVYLKSSDNRLLMSLLLFIFVLFLCLFSYNCYKGYLPG-QCLKFRSALLLGKKTP 777
Mouse 778 KSDFSDLEQSVKETLVEPGSFSQQNGDHPKPAL--DTGYETEQDTITSKVPTDR 829 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sema4d | NP_001268809.1 | Sema_4D | 31..501 | CDD:200520 | 156/482 (32%) |
PSI | 503..548 | CDD:396154 | 10/44 (23%) | ||
Ig | 563..646 | CDD:416386 | 14/89 (16%) | ||
Ig strand B | 569..577 | CDD:409353 | 3/7 (43%) | ||
Ig strand C | 583..589 | CDD:409353 | 0/5 (0%) | ||
Ig strand C' | 591..594 | CDD:409353 | 1/2 (50%) | ||
Ig strand D | 600..604 | CDD:409353 | 0/3 (0%) | ||
Ig strand E | 607..614 | CDD:409353 | 0/6 (0%) | ||
Ig strand F | 620..629 | CDD:409353 | 0/8 (0%) | ||
Ig strand G | 633..646 | CDD:409353 | 3/19 (16%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 649..709 | 15/69 (22%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 793..839 | 11/39 (28%) | |||
Sema1b | NP_001163178.1 | Sema_1A | 55..511 | CDD:200498 | 157/484 (32%) |
PSI | 510..>537 | CDD:214655 | 8/26 (31%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3611 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR11036 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |