DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema4c and Sema1b

DIOPT Version :10

Sequence 1:XP_006495867.1 Gene:Sema4c / 20353 MGIID:109252 Length:943 Species:Mus musculus
Sequence 2:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster


Alignment Length:675 Identity:199/675 - (29%)
Similarity:312/675 - (46%) Gaps:103/675 - (15%)


- Green bases have known domain annotations that are detailed below.


Mouse   102 KFRPWVSAMAPHWAVWLLAAGLWGLGIGAEMWWNLVPRKTVSSGELVT----VVRRFSQTGIQDF 162
            |.||..:||..:....:|...|.||.|.|....::.|       :|.|    |:..|.......|
  Fly     4 KSRPSSAAMLVNAIPMILLITLSGLTIVAGWMPDVKP-------DLQTKQDKVLAHFIGNSTDYF 61

Mouse   163 LTLTLTEHSG-LLYVGAREALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFL 226
            ..|   :|:. .:.|||::.::..|:..|:....:.|.:....:..|..||| ::.:|.|::|..
  Fly    62 KIL---DHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGK-HEWDCHNYLRVY 122

Mouse   227 QPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRA---------EFE-----DGKGKCPYDPAKGHT 277
            ....:..:.:|||.:::|:|.:...:..:.:.|         .:|     :.:|.|||.||...|
  Fly   123 ALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNST 187

Mouse   278 GLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTE-YLAFWLNEPHFVGSAFVPESVGSFTGDD 341
            ....||.|||||:.:|.|.:|:|.|     .:::|| |....||:|.|||:.   |..|      
  Fly   188 YAFADGHLYSATVADFSGGDPLIYR-----ENLRTEQYDLKQLNQPDFVGAI---ERNG------ 238

Mouse   342 DKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAP-DWKVYFNQ 405
             .:.|||.|.::|...:.:.|.:|||||||.|.||..:..|.||:||||||.||.| ::..||::
  Fly   239 -YVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYFDE 302

Mouse   406 LKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARY-TD 469
            ::|:..: ..|...:..:.||......:..||||.:.::.|...|:|.:|...:....|... .:
  Fly   303 IQAISPI-VESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVERE 366

Mouse   470 PVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTH--- 531
            .||.||||.|:.:         |..|....:||||.|||||:.|....|||||.|  .|..|   
  Fly   367 QVPKPRPGQCVED---------SRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTK--VNLHHRLT 420

Mouse   532 --VVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIH-----------MVEELQVFD-QEPVE 582
              .|..:|..|.||.|.|::.||.||.:.|.:::.. .|           ::.|:||.. ..|:.
  Fly   421 AIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILS-THPNSTVDRLKTVVISEMQVLPLGTPIR 484

Mouse   583 SLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRC--VATTSGRSGS 645
            .||:|.||..|...|...||.:.|..|:....|:.|:..:||.|||::.|..|  :||:..:.|:
  Fly   485 ELVISTSKNSLVVVSDGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGT 549

Mouse   646 FLVQHVANLDTSK-----MCNQYGIKKVRSIPKNITVVSGTDLVLPCH----LSSNLAHAHWTFG 701
              ..::.:|:::|     :|...    .|..|...||...|....|..    |.||:..:.   |
  Fly   550 --KTYLQSLNSTKKAAALLCPHI----PRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQ---G 605

Mouse   702 SQDLPAEQP--GSFLYDTGLQALVV 724
            :|....:||  |.   |.||..:.:
  Fly   606 NQPSLEQQPTGGD---DFGLNKITL 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema4cXP_006495867.1 Sema_4C 151..607 CDD:200519 150/490 (31%)
PSI 608..>637 CDD:214655 10/30 (33%)
Ig 673..757 CDD:472250 15/58 (26%)
Ig strand B 683..687 CDD:409456 0/3 (0%)
Ig strand C 695..699 CDD:409456 0/3 (0%)
Ig strand E 720..724 CDD:409456 0/3 (0%)
Ig strand F 734..739 CDD:409456
Ig strand G 751..754 CDD:409456
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 150/487 (31%)
PSI 510..>537 CDD:214655 9/26 (35%)
Blue background indicates that the domain is not in the aligned region.

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