DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema4c and Sema1a

DIOPT Version :9

Sequence 1:XP_006495867.1 Gene:Sema4c / 20353 MGIID:109252 Length:943 Species:Mus musculus
Sequence 2:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster


Alignment Length:888 Identity:249/888 - (28%)
Similarity:377/888 - (42%) Gaps:206/888 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse   116 VWLLAAGLWGLGIGAEMWW--NLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGA 178
            |:||   |..|.||.:..|  |:.|:..|..|. ..|::......:.|...| :|:....|.:||
  Fly    52 VFLL---LTVLVIGNQSAWQENIRPKLYVELGP-EDVLKFVGNESVVDHFKL-VTKDGNSLLIGA 111

Mouse   179 REALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQ 243
            |..:|..|:..|..|..:.|.:|.:....|..|||..:. |.|:||.:...:...|:||||.:|:
  Fly   112 RNTVFNLSIHDLVEQQRLVWTSPEDDTKMCLVKGKDEEA-CQNYIRIMVVPSPGRLFVCGTNSFR 175

Mouse   244 PKC-TY-INMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGT 306
            |.| || |:...:||:..  ::|:..|||||....|.:|.|.||||.|:.:|.|::|:|.|    
  Fly   176 PMCNTYIISDSNYTLEAT--KNGQAVCPYDPRHNSTSVLADNELYSGTVADFSGSDPIIYR---- 234

Mouse   307 HHSIKTE-YLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVC 370
             ..::|| |.:..||.|:|         |.||| ..|.:||||.|.|||:....:.:.:||||||
  Fly   235 -EPLQTEQYDSLSLNAPNF---------VSSFT-QGDFVYFFFRETAVEFINCGKAIYSRVARVC 288

Mouse   371 KGDMGGARTLQKKWTTFLKARLVCSAP-DWKVYFNQLKAVHTL---RGASWHNTTFFGVFQARWG 431
            |.|.||....:.:||:|||:||.||.| |:..|||::::...|   :..|..:...:|||.....
  Fly   289 KWDKGGPHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEGQYGSMSSKLIYGVFNTPSN 353

Mouse   432 DMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTD-PVPSPRPGSCINNWHRDNGYTSSLEL 495
            .:..||||.:.|:.|...|||.:||.:.....|....: .||.||||||    |.|     |..|
  Fly   354 SIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSC----HND-----SRAL 409

Mouse   496 PDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNT--NFTHVVAD---RVPGLDGATYTVLFIGTGDG 555
            ||.||||||.|.||::.|.....:|:||:.:|  .||.:..|   :.||  |.||.|:|:||..|
  Fly   410 PDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQIKTPG--GKTYDVIFVGTDHG 472

Mouse   556 WLLKAV------------SLGPWIHMVEELQVFDQ-EPVESLVLSQSKKV------------LFA 595
            .::|:|            |:     ::||:.|..: ||:.:|.:.::.:.            |..
  Fly   473 KIIKSVNAESADSADKVTSV-----VIEEIDVLTKSEPIRNLEIVRTMQYDQPKDGSYDDGKLII 532

Mouse   596 GSRSQLVQLSLADC--TKYRFCVDCVLARDPYCAWNVNTSRCVATTSGR--SGSFLVQHVANLDT 656
            .:.||:|.:.|..|  .|...|.:||..:||||||:....:|.:..:.|  ..::..|:||    
  Fly   533 VTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSHGAPRWLEENYFYQNVA---- 593

Mouse   657 SKMCNQYGIKKVRSIPKNITVVSGTDLVLPC-HLSSNLAHAHWTFGSQDLPAEQPG----SFLYD 716
                                  :|.....|. .::|..|:|          .||.|    ..|.|
  Fly   594 ----------------------TGQHAACPSGKINSKDANA----------GEQKGFRNDMDLLD 626

Mouse   717 TGLQAL---VVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLA 778
            :..|:.   ::........|| :..::....:...|:.::||:|||..:|             |.
  Fly   627 SRRQSKDQEIIDNIDKNFEGP-QISADIINAQYTVETLVMAVLAGSIFSL-------------LV 677

Mouse   779 VVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDP 843
            ....|..|          .||..::.:...                       |.|:|:.:    
  Fly   678 GFFTGYFC----------GRRCHKDEDDNL-----------------------PYPDTEYE---- 705

Mouse   844 VGYYYSDGSLKIVPGHARCQ----------------PGGGPPSPPPG---IPGQPLPSPTRLHLG 889
              |:....::...|...|.|                |...|..|||.   .|...|..|....:.
  Fly   706 --YFEQRQNVNSFPSSCRIQQEPKLLPQVEEVTYAEPVLLPQPPPPNKMHSPKNTLRKPPMHQMH 768

Mouse   890 GGRNSNA------NGY-VRLQLGGEDRGGSGHPLPELADELRR 925
            .|.||..      :|| .:....|.|..|:......:.|..||
  Fly   769 QGPNSETLFQFQPDGYNTQQSYRGRDNFGTLRSHQVMGDNYRR 811

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema4cXP_006495867.1 Sema_4C 151..607 CDD:200519 168/493 (34%)
PSI 608..>637 CDD:214655 12/30 (40%)
Ig 673..757 CDD:386229 16/91 (18%)
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 169/489 (35%)
PSI 545..>579 CDD:214655 12/33 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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