Sequence 1: | XP_006495867.1 | Gene: | Sema4c / 20353 | MGIID: | 109252 | Length: | 943 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001260265.1 | Gene: | Sema1a / 34192 | FlyBaseID: | FBgn0011259 | Length: | 1131 | Species: | Drosophila melanogaster |
Alignment Length: | 888 | Identity: | 249/888 - (28%) |
---|---|---|---|
Similarity: | 377/888 - (42%) | Gaps: | 206/888 - (23%) |
- Green bases have known domain annotations that are detailed below.
Mouse 116 VWLLAAGLWGLGIGAEMWW--NLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGA 178
Mouse 179 REALFAFSVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQ 243
Mouse 244 PKC-TY-INMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGT 306
Mouse 307 HHSIKTE-YLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVC 370
Mouse 371 KGDMGGARTLQKKWTTFLKARLVCSAP-DWKVYFNQLKAVHTL---RGASWHNTTFFGVFQARWG 431
Mouse 432 DMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTD-PVPSPRPGSCINNWHRDNGYTSSLEL 495
Mouse 496 PDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNT--NFTHVVAD---RVPGLDGATYTVLFIGTGDG 555
Mouse 556 WLLKAV------------SLGPWIHMVEELQVFDQ-EPVESLVLSQSKKV------------LFA 595
Mouse 596 GSRSQLVQLSLADC--TKYRFCVDCVLARDPYCAWNVNTSRCVATTSGR--SGSFLVQHVANLDT 656
Mouse 657 SKMCNQYGIKKVRSIPKNITVVSGTDLVLPC-HLSSNLAHAHWTFGSQDLPAEQPG----SFLYD 716
Mouse 717 TGLQAL---VVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLA 778
Mouse 779 VVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDP 843
Mouse 844 VGYYYSDGSLKIVPGHARCQ----------------PGGGPPSPPPG---IPGQPLPSPTRLHLG 889
Mouse 890 GGRNSNA------NGY-VRLQLGGEDRGGSGHPLPELADELRR 925 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sema4c | XP_006495867.1 | Sema_4C | 151..607 | CDD:200519 | 168/493 (34%) |
PSI | 608..>637 | CDD:214655 | 12/30 (40%) | ||
Ig | 673..757 | CDD:386229 | 16/91 (18%) | ||
Sema1a | NP_001260265.1 | Sema_1A | 91..546 | CDD:200498 | 169/489 (35%) |
PSI | 545..>579 | CDD:214655 | 12/33 (36%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3611 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR11036 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |