DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema3e and Sema1b

DIOPT Version :10

Sequence 1:NP_035478.2 Gene:Sema3e / 20349 MGIID:1340034 Length:775 Species:Mus musculus
Sequence 2:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster


Alignment Length:642 Identity:184/642 - (28%)
Similarity:296/642 - (46%) Gaps:99/642 - (15%)


- Green bases have known domain annotations that are detailed below.


Mouse     7 ILTLLLWG-HLLELWTPGHSANPSYPRLRLSHKELLEL---NRTSIFQSPLGFLDLHTMLLDEYQ 67
            ||.:.|.| .::..|.|...     |.|:....::|..   |.|..|:           :||...
  Fly    20 ILLITLSGLTIVAGWMPDVK-----PDLQTKQDKVLAHFIGNSTDYFK-----------ILDHND 68

Mouse    68 ERLFVGGRDLVYSLNLERVSDGYREI---YWPSTAVKVEECIMKGKDANECANYIRVLHHYNRTH 129
            |.:.||.:|::|:::|    :|.:||   .|.||....|.|.:|||...:|.||:||........
  Fly    69 EFVLVGAKDVIYNVSL----NGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLRVYALRPNGE 129

Mouse   130 LLTCATGAFDPHCA-FIRVGHHSEEP-------LFHLESHRSERGRGRCPFDPNSSFVSTLVGNE 186
            :|.|.|.::.|.|. :..|...|||.       ....|..|....:|.||:.|..:.........
  Fly   130 VLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGH 194

Mouse   187 LFAGLYSDYWGRDSAIFRSMGKLGHIRTEHDDERLLKEPKFVGSYMIPDNEDRDDNKMYFFFTEK 251
            |::...:|:.|.|..|:|.     ::|||..|.:.|.:|.|||:.       ..:..:.|||.|.
  Fly   195 LYSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAI-------ERNGYVLFFFREL 247

Mouse   252 ALEAENNAHTIYTRVGRLCVNDMGGQRILVNKWSTFLKARLVCSVPGMNGIDTYFDELEDVFLLP 316
            ::|..|....:|:||.|:|.||.||.......|::||||||.|||||  ....||||::.:..:.
  Fly   248 SMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPG--EFPFYFDEIQAISPIV 310

Mouse   317 TRDPKNPVIFGLFNTTSNIFRGHAVCVYHMSSIREAFNGPYAHKEGPEYHWSLYE-GKVPYPRPG 380
            ....|: :|:.:|.|:.|...|.|||.:::..|..||:|.:..::..:.||...| .:||.||||
  Fly   311 ESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPG 374

Mouse   381 SCASKVNGGKYGTTKDYPDDAIRFARMHPLMYQPIKPVHKKPILVKTDGKYNLRQLAV-DRVEAE 444
            .|..        .::.....|:.|.:.||||.:.:..||.:|:|.|.:..:.|..:|| .:|::.
  Fly   375 QCVE--------DSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSL 431

Mouse   445 DG-QYDVLFIGTDTGIVLKVITIY----NQETEWMEEVILEELQIFKDPAPIISMEISSKRQQLY 504
            .| .|||::.|||.|.|.|.|.|.    |...:.::.|::.|:|:.....||..:.||:.:..|.
  Fly   432 SGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLV 496

Mouse   505 IGSASAVAQVRFHHCDMYGSACADC--CLA-RDPYCAWDGISCSRYYPTGAHAKRRFRRQDVRHG 566
            :.|..::..|..|||    |...||  ||: :||.||||                 .:..:.::.
  Fly   497 VVSDGSLVSVPLHHC----SHIVDCLGCLSLQDPICAWD-----------------LQTHECKNL 540

Mouse   567 NAAQQCFGQQFVGDALDRTEE----------RLAYGIESNSTLLECTPRSLQAKVIW 613
            ..:|..||.:....:|:.|::          |.|.|.|:.|.:....|.:.:.|:::
  Fly   541 ATSQHKFGTKTYLQSLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLY 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema3eNP_035478.2 Sema_3E 49..519 CDD:200514 148/487 (30%)
PSI 518..566 CDD:214655 13/50 (26%)
Ig_Sema3 585..675 CDD:409455 8/39 (21%)
Ig strand A 585..590 CDD:409455 2/14 (14%)
Ig strand B 595..603 CDD:409455 1/7 (14%)
Ig strand C 609..615 CDD:409455 1/5 (20%)
Ig strand C' 617..620 CDD:409455
Ig strand D 630..634 CDD:409455
Ig strand E 637..644 CDD:409455
Ig strand F 650..659 CDD:409455
Ig strand G 662..675 CDD:409455
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 150/493 (30%)
PSI 510..>537 CDD:214655 13/47 (28%)
Blue background indicates that the domain is not in the aligned region.

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