DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema3a and Sema1b

DIOPT Version :10

Sequence 1:NP_033178.2 Gene:Sema3a / 20346 MGIID:107558 Length:772 Species:Mus musculus
Sequence 2:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster


Alignment Length:684 Identity:196/684 - (28%)
Similarity:303/684 - (44%) Gaps:113/684 - (16%)


- Green bases have known domain annotations that are detailed below.


Mouse    51 LANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECA 115
            :.||:.|.. :||.....:.|||||.|::.:|..:|:..::.|..:...|:.|...||... :|.
  Fly    54 IGNSTDYFK-ILDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGKHEW-DCH 116

Mouse   116 NFIKVLEAYNQTHLYACGTGAFHPICTYI--------EVGHHPEDNIFKLQDSHFENGRGKSPYD 172
            |:::|........:..|||.::.|.|.:.        |.|.....:..:.:.|.....:|..||.
  Fly   117 NYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYS 181

Mouse   173 PKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDN 237
            |...:.....||.|||.|.|||.|.|..|:|     ..:||||:|.:.||.|.|:.|       .
  Fly   182 PAHNSTYAFADGHLYSATVADFSGGDPLIYR-----ENLRTEQYDLKQLNQPDFVGA-------I 234

Mouse   238 PEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGID 302
            ..:..|.|||||.:::..:.|||.::|:.::||||.||..|....||:||||||.|||||.  ..
  Fly   235 ERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FP 297

Mouse   303 THFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWV 367
            .:|||:|.:..:.....|: ::|.|||||.|...|||||.:::.|:...|.|.:..:......|:
  Fly   298 FYFDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWL 361

Mouse   368 PYQ-GRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQF 431
            |.: .:||.||||.|       .:.::.|....:.|.::||.|...|..::.||::.|.:::::.
  Fly   362 PVEREQVPKPRPGQC-------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRL 419

Mouse   432 TQIVV-DRVDAEDG-QYDVMFIGTDVGTVLKVVSV----PKETWHDLEEVLLEEMTVFREPTTIS 490
            |.|.| .:|.:..| .|||::.|||.|.|.|.:::    |..|...|:.|::.||.|....|.|.
  Fly   420 TAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIR 484

Mouse   491 AMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSRYFPTAKRRTRR 555
            .:.:||.:..|.:.|...:..:|||.|. :...|..|...:||.||||..               
  Fly   485 ELVISTSKNSLVVVSDGSLVSVPLHHCS-HIVDCLGCLSLQDPICAWDLQ--------------- 533

Mouse   556 QDIRNGDPLTH-CSDLQHHDNHHGPSLEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNEDRK 619
                     || |.:|....:..|             :.|:|               |..|..:|
  Fly   534 ---------THECKNLATSQHKFG-------------TKTYL---------------QSLNSTKK 561

Mouse   620 EEIRMGDHIIR-----------------TEQGLLLRSLQKKDSGNY--LCHAVEHGFMQTLLKVT 665
            ....:..||.|                 ||:..||.|......||.  |......|....|.|:|
  Fly   562 AAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQGNQPSLEQQPTGGDDFGLNKIT 626

Mouse   666 LEVIDTEHLEELLHKDDDGDGSKIKEMSSSMTPS 699
            |..:|.:.:...|: |.....:.:.|:..:.|||
  Fly   627 LTSMDPDDIMPNLN-DPQKSTASVDEIKYASTPS 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema3aNP_033178.2 Sema_3A 26..518 CDD:200510 154/481 (32%)
PSI 516..>552 CDD:214655 9/35 (26%)
Ig_Sema3 580..671 CDD:409455 21/109 (19%)
Ig strand A 580..586 CDD:409455 0/5 (0%)
Ig strand B 591..599 CDD:409455 2/7 (29%)
Ig strand C 605..611 CDD:409455 0/5 (0%)
Ig strand C' 613..616 CDD:409455 0/2 (0%)
Ig strand D 626..630 CDD:409455 2/3 (67%)
Ig strand E 633..640 CDD:409455 2/6 (33%)
Ig strand F 646..655 CDD:409455 3/10 (30%)
Ig strand G 658..671 CDD:409455 4/12 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 729..772
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 154/479 (32%)
PSI 510..>537 CDD:214655 11/51 (22%)
Blue background indicates that the domain is not in the aligned region.

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