DRSC/TRiP Functional Genomics Resources

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Protein Alignment Selp and hig

DIOPT Version :10

Sequence 1:NP_035477.1 Gene:Selp / 20344 MGIID:98280 Length:768 Species:Mus musculus
Sequence 2:NP_724773.1 Gene:hig / 35949 FlyBaseID:FBgn0010114 Length:958 Species:Drosophila melanogaster


Alignment Length:601 Identity:141/601 - (23%)
Similarity:201/601 - (33%) Gaps:210/601 - (34%)


- Green bases have known domain annotations that are detailed below.


Mouse   185 CYPG-FYGPEC--------------EYVKECGKVNIPQHVLMNCSH------------------- 215
            |..| :.||.|              ...|.|....||.|:|::..:                   
  Fly   480 CVKGKWVGPLCATNEEDDNGNVKFQPLYKSCHVNRIPSHLLLSYRNISVTPIPPNRGWRKTRLSK 544

Mouse   216 ---------------PLGEFSFNSQCTFSCAEG-YELDGPGELQCLASGIWTNNPPKC------- 257
                           |.|. |..::|.   ..| |:|.|...:.| ::|:|....|.|       
  Fly   545 STLLSNTEINVGWDLPHGH-SLQARCQ---ELGIYKLLGESRVLC-SNGLWAPRMPSCVPTTVLT 604

Mouse   258 ----DAVQ---------CQSLE------APPHGT--MACMHPIAAFAYDSSCKFECQPGYRARGS 301
                |:..         ..|.|      .|||.|  |.||:|                  |.||:
  Fly   605 NYSEDSAPSIRIKIFNGSHSFEPSGVMAVPPHSTVLMDCMYP------------------RVRGT 651

Mouse   302 NTLHCTGSGQWSEPLPTCEAIACEPPEIPIHGSMDCVPSTGTFGYNSSCTFLCAEGFVLKGNDAI 366
            .....|   .|.....|..:.|.|...:....|:..:.:      |.|.||.|.....|..:.|:
  Fly   652 PEWSWT---SWYMQYSTGWSPAQEEKAVRYRLSIKNIEN------NDSGTFTCTSPRGLTNSIAV 707

Mouse   367 QCADSGQWTAPAPFCEALQCPEFPVPSKAQVNCSDPFGTLTYQSVCSFSCDEGSLLVGASVIRCL 431
            ..|.|        .|..|..|..|:..:.:.|   ..|...:     :.|.||..|.||....||
  Fly   708 VVATS--------TCPQLTEPLAPLKLRLEGN---KLGQRAH-----YECPEGFRLDGAWNATCL 756

Mouse   432 ATGHWNGAPPECQAVSCAPMLSPENGSMTCVQPLGNSTYKSTCQFMCDEGFYLSGPERLDCSPSG 496
            |:|:|:...|.|.|:.| |.|..::..::.:: |..|.: ....|.|..||.|:||.:|||.|||
  Fly   757 ASGNWSSPTPTCHAIQC-PRLELDDPHLSLIE-LNTSAW-GRAVFKCQWGFKLTGPAQLDCEPSG 818

Mouse   497 HWTGTPPTCEAIKCPGIFAPEQGNL-DCSHVHGEFGVGSICHFSCNEDFELLGSENVECTVSGRW 560
            .|:|..|.|:.|:|....||..|.: ..|.......||::..||||:...|:|..::.||.:|:|
  Fly   819 VWSGPVPRCKVIQCVMPVAPLNGRIGGTSLSQRRLTVGALVTFSCNDGHSLVGESSIICTENGQW 883

Mouse   561 SAPPPTCKGITSLPAPAVRCPALTTPGQGTMSCQHHLGSFGPNTTCYFGCKTGFTLRGANSLRCR 625
            |..||.||.         :||....|..|                                    
  Fly   884 SHSPPFCKS---------QCPYPGDPPNG------------------------------------ 903

Mouse   626 ASGQWTAVTPMCRAVKCSELHMDTAVAMNCSNPWGNFSY--GSTCTFQCPEG--QSLNG-SVRAT 685
                  .:.|:                        .|:|  |...:.||..|  ||..| ..|..
  Fly   904 ------LIAPL------------------------KFNYDAGDYLSVQCRPGFVQSYEGPPERPK 938

Mouse   686 CREDGHWSDAMPTCQA 701
            |:.||.||..||.|::
  Fly   939 CQPDGRWSGPMPKCKS 954

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SelpNP_035477.1 CLECT_selectins_like 42..160 CDD:153062
EGF_CA <168..195 CDD:238011 5/24 (21%)
CCP 200..257 CDD:153056 17/91 (19%)
PHA02927 289..505 CDD:222943 59/215 (27%)
PHA02927 462..699 CDD:222943 64/242 (26%)
Endocytosis signal. /evidence=ECO:0000305 756..759
Interaction with SNX17. /evidence=ECO:0000250 759..768
higNP_724773.1 Ig_3 612..696 CDD:464046 23/110 (21%)
PHA02927 705..952 CDD:222943 90/340 (26%)
Blue background indicates that the domain is not in the aligned region.

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