Sequence 1: | XP_017172001.1 | Gene: | Scn8a / 20273 | MGIID: | 103169 | Length: | 1988 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261172.1 | Gene: | NaCP60E / 37981 | FlyBaseID: | FBgn0085434 | Length: | 2896 | Species: | Drosophila melanogaster |
Alignment Length: | 2676 | Identity: | 821/2676 - (30%) |
---|---|---|---|
Similarity: | 1170/2676 - (43%) | Gaps: | 899/2676 - (33%) |
- Green bases have known domain annotations that are detailed below.
Mouse 53 PKPNSDLEAGKSLPFIYGDIPQGLVAVPLEDFDPYYLTQKTFVVLN---RGKTLFRFSATPALYI 114
Mouse 115 LSPFNLIRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIA 179
Mouse 180 RGFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL 244
Mouse 245 IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCV-----VWPINFNESYLENGTRGFDWEE 304
Mouse 305 YINNKTNFYMVPGMLEPLLCGNSSDAGQCPEGFQCMKAGRNPNYGYTSFDTFSWAFLALFRLMTQ 369
Mouse 370 DYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAE------QK 428
Mouse 429 EAEF---------KAMLEQLKKQQEEAQAAAMA-----------TSAGTVSEDAIEEEGEDGVGS 473
Mouse 474 PRSSSELSKLSS---------KSAKERRNRRKKRKQKELSEGEEKGDPEKVFKSESEDGMRRKAF 529
Mouse 530 RLPDNRIGRKFSIMNQSLLSIPGSPFLSRHNSKSSIFSFRGPGRFRDPGSENEFADDEHSTVEES 594
Mouse 595 E--------GRRDSLFIPIRARERRSSYSGYSGYSQCSRSSRIFPSLRRSVKRNSTVDCNGVVSL 651
Mouse 652 IGPGSHIGRLLPEVKIDKAATDSATTEVEIKKKGPGSLLVSMEQLASYGRKDRINSIMSVVTNTL 716
Mouse 717 VEELEESQRKCPPCWYKFANTFLIWECHPY--WIKLKEIVNLIVMDPFVDLAITICIVLNTLFMA 779
Mouse 780 MEHHPMTPQFEHVLAVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELGLAD 844
Mouse 845 VEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSY 909
Mouse 910 KECVCKISQECKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM---EVAGQAMCLIVFMMVMVI 971
Mouse 972 GNLVVLNLFLALLLSSFSADNLAATDDD-GEMNNLQISVIRI----------------------- 1012
Mouse 1013 ---------------------------KKGVAWAKVKVHAF------------------------ 1026
Mouse 1027 ---------------------MQAHFKQREADEVKPLDELYEKKANCIANHTGVDIHRNGDFQK- 1069
Mouse 1070 NGNGT---------------------------------------------------------TSG 1077
Mouse 1078 IGS----------SVEKYIIDEDHMSFIN-NPNLTVRVP-------------------------- 1105
Mouse 1106 ----------------------------------------------------------------- 1105
Mouse 1106 -------------IAVGESDFENL------NTEDV-----------SSESDPEGSKD-------- 1132
Mouse 1133 -----------------------------------------------------------KLDD-- 1136
Mouse 1137 ---------------------------TSSSEG----------------------STIDIKPEVE 1152
Mouse 1153 EVP-------------------------------------------------------------- 1155
Mouse 1156 ----------------------------------------------------------------- 1155
Mouse 1156 -VEQPEEYLD------------------------------------------------------- 1164
Mouse 1165 -----------------------------------------PDACFTEGCVQR--FKC-----CQ 1181
Mouse 1182 VNIEEGLGKSWWILRKTCFLIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKV 1246
Mouse 1247 FTYIFILEMLLKWTAYGFVKFFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRP 1311
Mouse 1312 LRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEIRFEID 1376
Mouse 1377 EVNNKTDCEKLMEGNNTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPDEQPD 1441
Mouse 1442 YEGNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGG--QDIFMTEEQKKYYNAMKKLG 1504
Mouse 1505 SKKPQKPIPRPLNKIQGIVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMENILYWINLVF 1569
Mouse 1570 VIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGR 1634
Mouse 1635 ILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDMFNFETF 1699
Mouse 1700 GNSMICLFQITTSAGWDGLLLPILNRPPDCSLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLI 1764
Mouse 1765 VVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRV 1829
Mouse 1830 PKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGELD---ILRQQMEERFVASNPSKVSY 1891
Mouse 1892 EPITTTLRRKQEEVSAVVLQRAYRGHL-------------------------------------- 1918
Mouse 1919 ARRGFIC-RKITSNKLENGGTHREKKESTPSTASLP-----SYDSVTKPDKEKQQRAEEGRR--- 1974
Mouse 1975 ----ERAKRQK 1981 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Scn8a | XP_017172001.1 | Ion_trans | 131..421 | CDD:366146 | 140/294 (48%) |
Na_trans_cytopl | 504..710 | CDD:371806 | 30/213 (14%) | ||
Ion_trans | 760..973 | CDD:366146 | 116/215 (54%) | ||
Na_trans_assoc | 999..1200 | CDD:368948 | 72/835 (9%) | ||
Ion_trans | 1205..1481 | CDD:366146 | 161/275 (59%) | ||
Na_channel_gate | 1473..1525 | CDD:240441 | 30/53 (57%) | ||
Ion_trans | 1530..1784 | CDD:366146 | 132/253 (52%) | ||
GPHH | 1796..1843 | CDD:374878 | 21/46 (46%) | ||
IQ | 1902..1923 | CDD:197470 | 6/58 (10%) | ||
NaCP60E | NP_001261172.1 | Ion_trans | 152..371 | CDD:278921 | 112/229 (49%) |
Ion_trans | 705..902 | CDD:278921 | 105/200 (53%) | ||
Ion_trans | 1768..2019 | CDD:278921 | 157/259 (61%) | ||
Na_channel_gate | 2009..2063 | CDD:240441 | 30/53 (57%) | ||
Ion_trans | 2085..2320 | CDD:278921 | 124/237 (52%) | ||
GPHH | 2331..2386 | CDD:293510 | 24/54 (44%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D37221at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100419 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R175 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.750 |