Sequence 1: | NP_001342095.1 | Gene: | Scn3a / 20269 | MGIID: | 98249 | Length: | 1996 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261172.1 | Gene: | NaCP60E / 37981 | FlyBaseID: | FBgn0085434 | Length: | 2896 | Species: | Drosophila melanogaster |
Alignment Length: | 2607 | Identity: | 820/2607 - (31%) |
---|---|---|---|
Similarity: | 1187/2607 - (45%) | Gaps: | 845/2607 - (32%) |
- Green bases have known domain annotations that are detailed below.
Mouse 26 EKRAAEEKAKKPKKEQDIDDENK-----------PKPNSDLEAGKNLPFIYGDIPPEMVSEPLED 79
Mouse 80 LDPYYVSKKTFVVLNK---GKAIFRFSATSALYILTPLNPVRKIAIKILVHSLFSMLIMCTILTN 141
Mouse 142 CVFMTLSNPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWNWLDFSVIVMAYVTEF 206
Mouse 207 VDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMG 271
Mouse 272 NLRNKCLQWPPSDSAFEINTTSYFNGTMDSNGTFVNVTMSTFNWKDYIADDSHFYVLDGQKDPLL 336
Mouse 337 CGNGSDAGQCPEGYICVKAGRNPNYGYTSFDTFSWAFLSLFRLMTQDYWENLYQLTLRAAGKTYM 401
Mouse 402 IFFVLVIFLGSFYLVNLILAVVAMAYEEQNQATLEEAE------QKEAEF---------QQMLEQ 451
Mouse 452 LKKQQEEAQAVAAASAASR---------------DFSGIGGLGELLESSSEASKLSSKSAKEWRN 501
Mouse 502 RR------KKRRQREHLEGNHR----------------PEGDRFPKSESEDSVKRRSFLFSLDGN 544
Mouse 545 PLSGDKKLCSPHQSLLSIRGSLFS----PRRNSKTSIFSFRGRAKDVGSENDFADDEHSTFEDSE 605
Mouse 606 SRRDSLFVPHRPGERRNSNVSQASMSSRMVPGLPANGKMHSTVDCNGVVSLVGGPSALTSPTGQL 670
Mouse 671 PPEGTTTETEVRKRRLSSYQISMEMLEDSSGRQRAMSIASILTNTMEELEESRQKCPPCWYRFAN 735
Mouse 736 VFLIWDCCD--SWLKVKHLVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTEQFSSVLTVGNLV 798
Mouse 799 FTGIFTAEMVLKIIAMDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAK 863
Mouse 864 SWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINEDCKLPRWHMND 928
Mouse 929 FFHSFLIVFRVLCGEWIETMWDCM---EVAGQTMCLIVFMLVMVIGNLVVLNLFLALLLSSFSSD 990
Mouse 991 NLAATDDD-NEMNNLQIAVGRM--------QKGIDYVKNKIRECFRKAFF--------------- 1031
Mouse 1032 ------RKPKV---------------------------IEIHEG--NKIDSCMSNNTGVV--EIS 1059
Mouse 1060 KELNYLK-------------------------DGNGT------------------TSGVGT---- 1077
Mouse 1078 ----------------------------------------------------------------- 1077
Mouse 1078 ---------------------------------------GSSVEKYVIDENDYMSFINN------ 1097
Mouse 1098 ----------------------------------PSLTVTVP---IAVGESDFENLNTEEFSSES 1125
Mouse 1126 ELEESKEKLNA-----------------------------TSSSEGSTVD--VAP---------- 1149
Mouse 1150 --PREG----------------------------------------------------------- 1153
Mouse 1154 -------------------------------EQAEIEPEED------------------------ 1163
Mouse 1164 -----------------------------------------------------LK---------- 1165
Mouse 1166 ----------------------------------------------------------------- 1165
Mouse 1166 ----------------------------------------------------------------- 1165
Mouse 1166 -----------PEACFTEGCIKKF----PFCQVSTEEGKGKIWWNLRKTCYSIVEHNWFETFIVF 1215
Mouse 1216 MILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQTYFTNAWCWLDFLI 1280
Mouse 1281 VDVSLVSLVANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLI 1345
Mouse 1346 FWLIFSIMGVNLFAGKFYHCVNMTTGSMFDMSEVNNFSDCQALGKQARWKNVKVNFDNVGAGYLA 1410
Mouse 1411 LLQVATFKGWMDIMYAAVDSRDVKLQPVYEENLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQ 1475
Mouse 1476 KKKFGG--QDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANKFQGMVFDFVTRQVFDISIMILIC 1538
Mouse 1539 LNMVTMMVETDDQSKYMTLVLSRINLVFIVLFTGEFLLKLISLRYYYFTIGWNIFDFVVVILSIV 1603
Mouse 1604 GMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMF 1668
Mouse 1669 IYAIFGMSNFAYVKKEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPDAIH 1733
Mouse 1734 PGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVW 1798
Mouse 1799 EKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLG 1863
Mouse 1864 ESGEMD---ALRIQMEDRFMASNPSKVSYEPITTTLKRKQEEVSAAIIQRNYRCYLLKQRLKNIS 1925
Mouse 1926 NTYDKET 1932 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Scn3a | NP_001342095.1 | Ion_trans | 127..434 | CDD:306908 | 140/306 (46%) |
Na_trans_cytopl | 510..697 | CDD:314757 | 29/206 (14%) | ||
Ion_trans | 759..972 | CDD:306908 | 116/215 (54%) | ||
Na_trans_assoc | 998..1201 | CDD:310839 | 71/822 (9%) | ||
Ion_trans | 1206..1478 | CDD:306908 | 158/271 (58%) | ||
Na_channel_gate | 1470..1522 | CDD:240441 | 32/53 (60%) | ||
Ion_trans | 1526..1782 | CDD:306908 | 133/255 (52%) | ||
GPHH | 1786..1849 | CDD:318993 | 36/62 (58%) | ||
NaCP60E | NP_001261172.1 | Ion_trans | 152..371 | CDD:278921 | 113/241 (47%) |
Ion_trans | 705..902 | CDD:278921 | 105/200 (53%) | ||
Ion_trans | 1768..2019 | CDD:278921 | 154/255 (60%) | ||
Na_channel_gate | 2009..2063 | CDD:240441 | 32/53 (60%) | ||
Ion_trans | 2085..2320 | CDD:278921 | 125/238 (53%) | ||
GPHH | 2331..2386 | CDD:293510 | 31/54 (57%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D37221at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100419 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.720 |