DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr2c and RpII33

DIOPT Version :9

Sequence 1:NP_033116.2 Gene:Polr2c / 20021 MGIID:109299 Length:275 Species:Mus musculus
Sequence 2:NP_477419.1 Gene:RpII33 / 34796 FlyBaseID:FBgn0026373 Length:275 Species:Drosophila melanogaster


Alignment Length:275 Identity:188/275 - (68%)
Similarity:244/275 - (88%) Gaps:1/275 - (0%)


- Green bases have known domain annotations that are detailed below.


Mouse     1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIA 65
            |||||||:|:|||||::||||::|:|:|:||||:|||||||.|.:||||||::|||:||.|||:|
  Fly     1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLA 65

Mouse    66 HRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPV 130
            ||:|||||.|||:|::|||:|||.|.:|||||||||||||:|:|:||||||:.||.|::.:|:||
  Fly    66 HRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADLKSSNAKVLPV 130

Mouse   131 TSRNRDNDPNDYVE-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRH 194
            ||||:..:.|:|.| .|:|||:||||||||:||||||||||||||||||||||.|||||||::||
  Fly   131 TSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH 195

Mouse   195 TVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDL 259
            |:||||:||||||::||::|:.:|||:...||.:|::||||.|:|:||.||:..:..||.|||:|
  Fly   196 TLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALKPENIVVMGVQVLKNKLSNL 260

Mouse   260 QTQLSHEIQSDVLTI 274
            |||||||.|:|.|.:
  Fly   261 QTQLSHESQNDALAV 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr2cNP_033116.2 RNAP_II_RPB3 7..266 CDD:132909 177/259 (68%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..226 11/22 (50%)
RpII33NP_477419.1 RNAP_II_RPB3 7..267 CDD:132909 177/259 (68%)
RPOLD 19..261 CDD:214766 163/241 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849612
Domainoid 1 1.000 359 1.000 Domainoid score I960
eggNOG 1 0.900 - - E1_COG0202
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2017
Inparanoid 1 1.050 415 1.000 Inparanoid score I1820
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53541
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004444
OrthoInspector 1 1.000 - - oto93045
orthoMCL 1 0.900 - - OOG6_101363
Panther 1 1.100 - - LDO PTHR11800
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3150
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.760

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