DRSC/TRiP Functional Genomics Resources

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Protein Alignment ELAVL2 and GBP2

DIOPT Version :9

Sequence 1:XP_011516080.2 Gene:ELAVL2 / 1993 HGNCID:3313 Length:392 Species:Homo sapiens
Sequence 2:NP_009916.1 Gene:GBP2 / 850346 SGDID:S000000517 Length:427 Species:Saccharomyces cerevisiae


Alignment Length:336 Identity:80/336 - (23%)
Similarity:137/336 - (40%) Gaps:47/336 - (13%)


- Green bases have known domain annotations that are detailed below.


Human    65 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 129
            |.|:|   :.|..|..:.|.|:||.|||::||:....::..|  |...|.|.|.:...:..:.||
Yeast   119 NFENS---IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAI 178

Human   130 NTLNGLRLQTKTIKVSYARPSSASIRDAN-------------LYVSGLPKTMTQKELEQLFSQYG 181
            :..:|.....:.:.|....|...:.::.:             :::..||.:|..:.|:.:|.:.|
Yeast   179 SKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFEVFIINLPYSMNWQSLKDMFKECG 243

Human   182 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAI 246
            .::.:.:.:| ..|.|||.|.:.:....|...||...||.:..|..  :.|:......:|.|...
Yeast   244 HVLRADVELD-FNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRV--LEVREGRFNKRKNNDRY 305

Human   247 LSQLYQSPNRRYPGP-LAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWC 310
            ..:.....:.|...| |||.| ...:|.       ..::|:          .|:|    ||....
Yeast   306 NQRREDLEDTRGTEPGLAQDA-AVHIDE-------TAAKFT----------EGVN----PGGDRN 348

Human   311 IFVY--NLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGY 373
            .|:|  ||......|.|:.:|||.|.:.|.: ::.....:..|...|...|..:|...|..||.|
Yeast   349 CFIYCSNLPFSTARSDLFDLFGPIGKINNAE-LKPQENGQPTGVAVVEYENLVDADFCIQKLNNY 412

Human   374 RLGDRVLQVSF 384
            ..|...||:|:
Yeast   413 NYGGCSLQISY 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ELAVL2XP_011516080.2 None
GBP2NP_009916.1 RRM1_HRB1_GBP2 121..197 CDD:410184 22/80 (28%)
RRM2_HRB1_GBP2 218..292 CDD:410185 18/76 (24%)
RRM3_HRB1_GBP2 347..425 CDD:410186 23/78 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 90 1.000 Inparanoid score I1714
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.920

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