DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ELAVL2 and Rbp9

DIOPT Version :9

Sequence 1:XP_011516080.2 Gene:ELAVL2 / 1993 HGNCID:3313 Length:392 Species:Homo sapiens
Sequence 2:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster


Alignment Length:386 Identity:229/386 - (59%)
Similarity:268/386 - (69%) Gaps:24/386 - (6%)


- Green bases have known domain annotations that are detailed below.


Human    17 GKSSWRTVFKGQVI---AAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYL 78
            |..|......||..   ||.....:|..|.||..|..|..|||.:.|       |.|||||||||
  Fly    60 GAGSTTNAAVGQATANNAASNNNNNNNNTNNNNNNNATANNNNNNEP-------DPKTNLIVNYL 117

Human    79 PQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 143
            ||.|:|:|::|||.|.||:|||||:|||:||||||||||||:..:|||||||.|||||||.||||
  Fly   118 PQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIK 182

Human   144 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 208
            ||.|||||.||:.||||||||||.|||.:||.|||.||:|||||||.|.:||:|:||||||||:|
  Fly   183 VSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQR 247

Human   209 IEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP-----NRRYPGPLAQQAQR 268
            .||:.|||.|||..|..:|||||||||||||...|.......|.:|     .|.:|...|..|..
  Fly   248 FEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAAYIAPQNTRGGRAFPANAAAGAAA 312

Human   269 FRLDNLLNMAYG----VKSRFSPMTIDGMTS--LAGINIPGHPGTGWCIFVYNLAPDADESILWQ 327
            ......::...|    |.||:||:|.|.:|:  :.|..|   ..:||||||||||||.:|::|||
  Fly   313 AAAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQGNTI---ASSGWCIFVYNLAPDTEENVLWQ 374

Human   328 MFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 388
            :|||||||.:||||||..:||||||||||||||:||.:||.|||||.||:|||||||||||
  Fly   375 LFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNK 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ELAVL2XP_011516080.2 None
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 213/332 (64%)
RRM1_Hu 109..186 CDD:241094 60/76 (79%)
RRM2_Hu 196..274 CDD:241096 56/77 (73%)
RRM3_Hu 355..432 CDD:240823 60/76 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165159631
Domainoid 1 1.000 121 1.000 Domainoid score I5685
eggNOG 1 0.900 - - E1_KOG0145
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 419 1.000 Inparanoid score I1806
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D425303at33208
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 1 1.000 - - mtm8515
orthoMCL 1 0.900 - - OOG6_103306
Panther 1 1.100 - - O PTHR10352
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X326
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.760

Return to query results.
Submit another query.