DRSC/TRiP Functional Genomics Resources

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Protein Alignment ND1 and ND1

DIOPT Version :9

Sequence 1:YP_009047278.1 Gene:ND1 / 19893558 FlyBaseID:FBgn0013679 Length:312 Species:Drosophila melanogaster
Sequence 2:YP_665629.1 Gene:ND1 / 26193 RGDID:620555 Length:318 Species:Rattus norvegicus


Alignment Length:308 Identity:152/308 - (49%)
Similarity:215/308 - (69%) Gaps:7/308 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNY 72
            |..|.|:|.:|:::|||||:|||:|||:|:|||||.||..||.|||.||:|||.||...||.::.
  Rat     4 INILTLLIPILIAMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFMKEPMRPLTTSM 68

  Fly    73 LSYYISPIFSLFLSLFVWMCMPFFVKLYSFNLGGLFFLCCTSLGVYTVMVAGWSSNSNYALLGGL 137
            ..:.|:|..||.|:|.:|:.:|....|.:.|||.||.|..:||.||:::.:||:|||.|:|.|.|
  Rat    69 SLFIIAPTLSLTLALSLWIPLPMPHPLINLNLGMLFILATSSLSVYSILWSGWASNSKYSLFGAL 133

  Fly   138 RAVAQTISYEVSLALILLSFIFLIGSYNMIYFFFYQVYMWFLIILFPMALVWMSISLAETNRTPF 202
            |||||||||||::|:||||.:.:.||:::......|.::|.||..:|||::|...:||||||.||
  Rat   134 RAVAQTISYEVTMAIILLSVLLMSGSFSLQMLITTQEHIWLLIPAWPMAMMWYISTLAETNRAPF 198

  Fly   203 DFAEGESELVSGFNVEYSSGGFALIFMAEYASILFMSMLFCVIFLG-------CDVFNLLFYMKL 260
            |..||||||||||||||::|.|||.|||||.:|:.|:.|..::|||       .::::..|..:.
  Rat   199 DLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALTSIVFLGPLYHINYPELYSTSFMTET 263

  Fly   261 TFISFVFIWVRGTLPRFRYDKLMYLAWKCFLSFSLNYLLFFIGFKILL 308
            ..:|..|:|:|.:.||||||:||:|.||.||..:|.:.:::|...|.|
  Rat   264 LLLSTTFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCMWYISLPIFL 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ND1YP_009047278.1 ND1 16..308 CDD:177241 147/298 (49%)
ND1YP_665629.1 ND1 1..318 CDD:177166 152/308 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352982
Domainoid 1 1.000 298 1.000 Domainoid score I1400
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 304 1.000 Inparanoid score I2577
OMA 1 1.010 - - QHG55628
OrthoDB 1 1.010 - - D1214989at2759
OrthoFinder 1 1.000 - - FOG0003668
OrthoInspector 1 1.000 - - oto98368
orthoMCL 1 0.900 - - OOG6_101576
Panther 1 1.100 - - LDO PTHR11432
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2539
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.910

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