DRSC/TRiP Functional Genomics Resources

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Protein Alignment CYTB and BI4

DIOPT Version :9

Sequence 1:YP_009047277.1 Gene:CYTB / 19893556 FlyBaseID:FBgn0013678 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_009316.1 Gene:BI4 / 854582 SGDID:S000007273 Length:638 Species:Saccharomyces cerevisiae


Alignment Length:250 Identity:137/250 - (54%)
Similarity:187/250 - (74%) Gaps:4/250 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RNSHPLFKIANNALVDLPAPINISSWWNFGSLLGLCLIIQILTGLFLAMHYTADINLAFYSVNHI 70
            |.|:....:.|:.::|.|.|.:|:.|||.||||||||:|||:||:|:||||:::|.|||.||.||
Yeast     4 RKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHI 68

  Fly    71 CRDVNYGWLLRTLHANGASFFFICIYLHVGRGIYYGSYKFTP---TWLIGVIILFLVMGTAFMGY 132
            .|||:.|::||.||||||||||:.:::|:.:|:|||||: :|   .|.:||||..|.:.|||:||
Yeast    69 MRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYR-SPRVTLWNVGVIIFILTIATAFLGY 132

  Fly   133 VLPWGQMSFWGATVITNLLSAIPYLGMDLVQWLWGGFAVDNATLTRFFTFHFILPFIVLAMTMIH 197
            ...:||||.|||||||||.||||::|.|:|.||||||:|.|.|:.|||..|:::|||:.||.::|
Yeast   133 CCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMH 197

  Fly   198 LLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFILISLVLISPNLLG 252
            |:.||..||:||:|:..|:|:||.|.||.|||:|...:.:.||...|..|||.||
Yeast   198 LMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPNTLG 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CYTBYP_009047277.1 CYTB 12..367 CDD:214440 134/243 (55%)
BI4NP_009316.1 Cytochrome_b_N 8..207 CDD:238176 112/199 (56%)
cytochrome_b_C 208..>255 CDD:294127 21/44 (48%)
Hop <363..592 CDD:224291
LAGLIDADG_1 408..495 CDD:279328
LAGLIDADG_1 516..608 CDD:279328
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346802
Domainoid 1 1.000 248 1.000 Domainoid score I350
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46878
orthoMCL 1 0.900 - - OOG6_102198
Panther 1 1.100 - - O PTHR19271
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1779
TreeFam 00.000 Not matched by this tool.
76.840

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