DRSC/TRiP Functional Genomics Resources

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Protein Alignment COX3 and COX3

DIOPT Version :9

Sequence 1:YP_009047271.1 Gene:COX3 / 19893540 FlyBaseID:FBgn0013676 Length:262 Species:Drosophila melanogaster
Sequence 2:YP_665635.1 Gene:COX3 / 26204 RGDID:621873 Length:261 Species:Rattus norvegicus


Alignment Length:259 Identity:172/259 - (66%)
Similarity:203/259 - (78%) Gaps:0/259 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 THSNHPFHLVDYSPWPLTGAIGAMTTVSGMVKWFHQYDISLFVLGNIITILTVYQWWRDVSREGT 67
            ||..|.:|:|:.||||||||:.|:...||:|.|||.....|..||.:..|||:||||||:.||||
  Rat     2 THQTHAYHMVNPSPWPLTGALSALLLTSGLVMWFHYNSTILLSLGLLTNILTMYQWWRDIIREGT 66

  Fly    68 YQGLHTYAVTIGLRWGMILFILSEVLFFVSFFWAFFHSSLSPAIELGASWPPMGIISFNPFQIPL 132
            |||.||..|..|||:||||||:|||.||..|||||:||||.|..:||..|||.||...||.::||
  Rat    67 YQGHHTPIVQKGLRYGMILFIVSEVFFFAGFFWAFYHSSLVPTHDLGGCWPPTGITPLNPLEVPL 131

  Fly   133 LNTAILLASGVTVTWAHHSLMENNHSQTTQGLFFTVLLGIYFTILQAYEYIEAPFTIADSIYGST 197
            |||::||||||::|||||||||.|.:...|.|..|:|||:|||||||.||.|..|:|:|.|||||
  Rat   132 LNTSVLLASGVSITWAHHSLMEGNRNHMNQALLITILLGLYFTILQASEYFETSFSISDGIYGST 196

  Fly   198 FFMATGFHGIHVLIGTTFLLVCLLRHLNNHFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWG 261
            |||||||||:||:||:|||:|||||.|..||:..|||||||||||||||||||||||::|||||
  Rat   197 FFMATGFHGLHVIIGSTFLIVCLLRQLKFHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COX3YP_009047271.1 COX3 4..258 CDD:214439 166/253 (66%)
COX3YP_665635.1 COX3 1..261 CDD:177161 172/259 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353767
Domainoid 1 1.000 385 1.000 Domainoid score I780
eggNOG 1 0.900 - - E1_COG1845
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 389 1.000 Inparanoid score I1932
OMA 1 1.010 - - QHG62397
OrthoDB 1 1.010 - - D1304563at2759
OrthoFinder 1 1.000 - - FOG0003223
OrthoInspector 1 1.000 - - oto97218
orthoMCL 1 0.900 - - OOG6_104028
Panther 1 1.100 - - LDO PTHR11403
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2639
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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