DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rp1 and CG1647

DIOPT Version :9

Sequence 1:NP_035413.1 Gene:Rp1 / 19888 MGIID:1341105 Length:2095 Species:Mus musculus
Sequence 2:NP_651636.1 Gene:CG1647 / 43401 FlyBaseID:FBgn0039602 Length:1222 Species:Drosophila melanogaster


Alignment Length:1441 Identity:255/1441 - (17%)
Similarity:480/1441 - (33%) Gaps:438/1441 - (30%)


- Green bases have known domain annotations that are detailed below.


Mouse   743 NKLNTF---------QNPKTQKLLAKRKSRPRKIVSTERLRKQE------IGQEDKILLHSDSKL 792
            :|:|.|         .|.:|:.||..::..|.:::..:|:.|:|      :|:..:.....:|..
  Fly    77 DKINDFYEFREMCYATNKQTRNLLGLKQIEPARLIDLKRIVKEERPISGAVGKRGRKRKGEESWP 141

Mouse   793 CESHLEKQSLFHVFNILEEDQKVLHR----PPFQVEKVARNLKGMAKKSLVPKVNDLHIMLRNQK 853
            ..::::.|        ::::..|.|:    .|.|:..:      ::|:.  |::.|         
  Fly   142 KNNNVKPQ--------VKKESFVWHKKQKLQPSQITSL------VSKRE--PEIKD--------- 181

Mouse   854 KQMGVKLKSGAEVSEQHVTTRADPLASLKKPDFPEGIPHHSGKSYVKRWLQNINSYPDFEHRKSG 918
                       |.:||..:.:..|..:.:|     .|....|:.::.:.|  .:.:....|..|.
  Fly   182 -----------EPAEQDTSLKGPPKKAGRK-----SICSVCGEKFLSKEL--ADEHKSLVHVPSI 228

Mouse   919 P--LCQNRSDVVNYNRNGFLGNNLHTTSSKGNGFLMESNKSKTKNDNWSGNTNQETGKSLVAKDN 981
            |  :| |..:..::|::....:.|....||                                   
  Fly   229 PRYIC-NACNQTHHNQSDIRAHQLWHKLSK----------------------------------- 257

Mouse   982 GEELNKHHCESQNGSLYDSYLVSLHDNCTLSQTTINEPSTKSHLSIEKSRPEVKLVYQEMNFATK 1046
                ..:.|.....|:.::|..:.|    |.:.|  .|:....|.:::..|..|..:....|...
  Fly   258 ----TPYKCPLCESSVANAYAFTRH----LREHT--PPTPVQLLVLDRECPLCKKTFVTNFFYNT 312

Mouse  1047 RQSIEVAIQVDTMGENVLKDYLPALLLRHLEA---FVPNNQKHQNGISQIPGSLAEVVFPSVIDN 1108
            .:   .||:....|.........|..:||...   ...|:.||              :.|.|:.|
  Fly   313 HR---CAIRKRKCGGCSRTLNTEAAYMRHAPTCPKIYLNHSKH--------------IMPQVVTN 360

Mouse  1109 SSTNLLLAWLLVLNLKRTMNSFCQSDAHKMTNRPSETA----ALLEVLKHVAITEEADDLKAAVA 1169
            .      |.:|:.|         :.:...:...|:.|.    .:.|.::.|.:.|..        
  Fly   361 E------AQMLIKN---------EIEEELLGLPPATTVPPDFVIDEGMQPVVVLERL-------- 402

Mouse  1170 NLMESTKTCSGSSGREQDMLPVNCTASSLHSVDECNENGSAQKTLLDEGYSVMGDCTSEMVSKSC 1234
                |:.....|||.:|           |.:....|.:..:.:..|.....::.:..:.:|  |.
  Fly   403 ----SSPLLRSSSGTDQ-----------LVAAKSKNSDRVSARNYLKRVDQLLKNTINTLV--SI 450

Mouse  1235 NSSCEMHMVSKTNPPK-QVDDQSDGLLTSNSCTVSQRSTGACFLTDGVYSHEACAQKEGVYEGAC 1298
            ....|:| ::.|.||: |.:...:         ..:......|..|...:::.|.:.:...|   
  Fly   451 KHEPEVH-INDTGPPRGQAESDPE---------PERNEEHPSFGDDIQAANDECQECQPETE--- 502

Mouse  1299 LSDETHIPIRDCHTIHSVHSKENKCTDDLE-----STEELKTVDKVPKGLSILADSMYKN-DSNV 1357
             ||:  |.:..|..|.||..|:....|..|     ..|.||...|:.|....|..|:..: |...
  Fly   503 -SDK--ISVAACDDIPSVSVKQEPEYDGYEKQTGVKQEPLKLKLKITKNHGKLNSSLIDDLDEAG 564

Mouse  1358 STFQNVNKLSSQRTLLSKTYLDSDKDYSPLEEFQNCPRKKIVNKKKSISSDKEESRTSEEPRS-I 1421
            ..|...:|...:|....:....|::..:...|.||.|..||  |::.:....|.:..:..|.: .
  Fly   565 QAFGRSSKKKKKRKHKEREKEASNETENCRTESQNQPAIKI--KQEPVDYAPEATVMTTIPMTQF 627

Mouse  1422 TNSMTSSERN-AISE--LESFEELESQDTSIFNM----NV--------------RAEKKSTKETM 1465
            .:|:..|||: .:.|  ::|.|:::.....:..|    ||              |||:...::::
  Fly   628 ESSLNESERSEEVDEAMIQSQEDVKPNRMELDRMMQISNVTSGVDMAEEAMALERAEEACPEDSL 692

Mouse  1466 QK----QSEARMSSELINVSGRKIIEQERRNT------AILETTARGQVT----PPSLAFC---Y 1513
            .|    :|.||.|:   ..:.||.....|.||      .:...:|...::    |.:|.:.   .
  Fly   693 HKVKSVKSTARKST---GGAERKTYSPPRTNTLPQIVAVVSGESAFNMISIKPEPRNLGYGDEEP 754

Mouse  1514 DSNKNTEKEISEGETKMRVKKMVDSMENESYSESSLNFKKH---------HRSPGTLDWSDYGSD 1569
            :..:.|.:||:..:.....|:.:.|::   .|:.|:..::.         ||:  .|:.||  .|
  Fly   755 EDQRETTEEINHNDMMEEEKEYIGSLD---LSDVSVKQERELDICEIDAVHRN--GLEKSD--ED 812

Mouse  1570 SESGYPCKASSNSHNDDSGQEKEPTRGIVKR-AIEKLYGKAEIIKPPFFHGSIHKSQVCPYNSVE 1633
            .:.|          |:||....:.....::| ..|::|.:.|:  ||                :|
  Fly   813 DDDG----------NEDSASSADEAEEAMERDTEERIYREIEL--PP----------------LE 849

Mouse  1634 VQCAKKTNFYESECQSLVSSEQVSRSSLIFQEFPQVDANGMGDSFGDSSIENVTKSSAHDRVFTE 1698
            :|........|||..    ..:|| ::|...|.|....:.:|       :|. :::||...|.| 
  Fly   850 LQNESSRKDLESERM----DTEVS-TALPASETPSQTRDVLG-------VEK-SEASAFSLVIT- 900

Mouse  1699 KENGKLIDNGKWLLRENHLWRVSSDNPGMYGNADTTSVDTLI--DKNSIEVPYSHFGELAPGPTM 1761
                                .:.|........|.:..::..|  ..::...|:||..|....|..
  Fly   901 --------------------NICSQAVPQPSAACSNDIECSIGPSPSTTNEPHSHTVENVQSPAN 945

Mouse  1762 AELSSSEIEEMTQPLEVKCNYFNFPHGSDSEPFGEDFPDA--QNKTCPKEKIPNH-HTEEKGN-- 1821
            ...:|:::....|.....|........|:|:...:|.|.|  |.:|...|.:|.| |:|.:.|  
  Fly   946 DLQTSAQVAIAAQSQPDPCIVSQPAASSESQADTKDLPPAASQIQTFNTESLPIHVHSETEDNSI 1010

Mouse  1822 -----YPSERL---CTSV---TQAFVSAGNKVHP--VCSDAIKTQPLPGSNITHGALQEGDSLDK 1873
                 |...|.   |.|.   ..:.|...|:..|  .|...|...|.||::....  .|.:||||
  Fly  1011 ENDASYLESRAQVDCQSAGTENPSVVLEQNESLPSGSCVSPIPENPSPGNSPPQH--DESESLDK 1073

Mouse  1874 LYALCGQHCPILTVIIQ-PVNEESRGFA----------YRKDSDIENSLDFQLWMKIYPFMPQSK 1927
            .....|....:.||.:. |.:.|:....          |..|.:.:|.|:.:|          |:
  Fly  1074 PEMAAGSAYCLATVSLDAPKDTEALALPPCDAAIIDSNYTSDEEQQNVLNHEL----------SE 1128

Mouse  1928 KHVFRSDGRNVSVGEEFAGNVIGDLCDQLYFKSMIDLVDQRANSLGKEINLKKFQLYLKKSFSDP 1992
            :.:...:.|.:.|.||              ..::::::....:|                     
  Fly  1129 QQLAIMEHRQLLVHEE--------------QPALLEVIPPGLSS--------------------- 1158

Mouse  1993 LSTSLLVVENRNSVSLSPSSWTDNFKSIDENNNFLN-----------RLP----NSSKNPNQVVR 2042
                                     :.|:|..|.:|           |.|    |...|.|::..
  Fly  1159 -------------------------RPIEETENRINEQQQDLEQGEERPPRFQANDDSNINEIAE 1198

Mouse  2043 ENTNFQFHLEL 2053
            .|.|.....||
  Fly  1199 NNNNANIEREL 1209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rp1NP_035413.1 DCX 35..110 CDD:176357
DCX 157..232 CDD:176357
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 358..379
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 643..688
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 863..887 5/23 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1400..1430 5/30 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1572..1595 4/22 (18%)
CG1647NP_651636.1 zf-AD 19..99 CDD:285071 5/21 (24%)
C2H2 Zn finger 203..224 CDD:275368 2/22 (9%)
C2H2 Zn finger 233..253 CDD:275368 4/20 (20%)
C2H2 Zn finger 262..282 CDD:275368 5/23 (22%)
C2H2 Zn finger 297..314 CDD:275368 3/16 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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