DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rp1 and zormin

DIOPT Version :9

Sequence 1:NP_035413.1 Gene:Rp1 / 19888 MGIID:1341105 Length:2095 Species:Mus musculus
Sequence 2:NP_001261317.1 Gene:zormin / 2769001 FlyBaseID:FBgn0052311 Length:3664 Species:Drosophila melanogaster


Alignment Length:2369 Identity:403/2369 - (17%)
Similarity:740/2369 - (31%) Gaps:894/2369 - (37%)


- Green bases have known domain annotations that are detailed below.


Mouse     9 FSMIHLTSEGQVPSPRHSNIT-----HPVV---AKRISFYKSGDPQF----------GGVRVVVN 55
            :.::.:.|.|:..|.....:|     .|..   |:|.|..|...|:|          .|.:||:.
  Fly  1767 YKVVAINSAGEASSSCELKVTPLNQAEPATRAQAERQSLPKDSQPKFERLLSDVLADEGEQVVLE 1831

Mouse    56 PRS----------FKT--------------------FDALLDSLSR--------KVPLPFG---- 78
            .::          |.|                    |..:|:::|.        ||..|.|    
  Fly  1832 VQASGDQPLTAQWFLTNKELQLDQRITTQSDSELGVFKLILNNVSGDDKGVYTVKVTNPAGDAKC 1896

Mouse    79 -----VRNISTPRGRHSITRLEELEDGKSYVCSHNKKVL---PVDLDK-------ARRRPRP--- 125
                 |::::.|..|.|.....|:.:  .:.|...|::.   ..::|:       .:.:|.|   
  Fly  1897 FSHLIVKSVNAPENRRSSQSSVEIIE--RHQCPEFKELFSDKQGEIDEVIKFECIVKGKPTPKVH 1959

Mouse   126 WL----------------SSRSISTHVQL--------------------C-----------PATA 143
            |.                ..|.:.|..:|                    |           ||::
  Fly  1960 WFFNDQPVHGHNFLVSTSGERQVLTIQKLTHDAVGKISCVAENEAGKATCVAFLNIRGSGLPASS 2024

Mouse   144 NMSTMAPGMLRAPRRLVVFR--------------NGDPKNKHVVLLSRRITQSFEAFLQYLTQVM 194
            ::.|::........|:.:.:              .|:.....|...|..|.||.:...|...:::
  Fly  2025 DVQTVSQEHNTESSRVTIKKQTFTTTSTSQVNSYEGNAPQTEVHHSSAHIDQSLKQLGQQRPEIV 2089

Mouse   195 QC-PVAKLYATDGRKVPSLQ----AVILSSGAVVAAGREPFKPGNYDIQKYLLPAKLPGISHRVH 254
            :. ...:|:.:.....|::|    :.|.||||                                 
  Fly  2090 ESHHYQELHKSKEMSSPTVQQKSFSFIQSSGA--------------------------------- 2121

Mouse   255 QKGKAKIEKRKMSTHMPSDLRPQTDSLISEKTYDCFSDFSVA------PENYLALETHESQSLST 313
             .|::.:......|.:..::.|:..:.:|.|..|..:|.|:.      |...:.:|.:..|..  
  Fly  2122 -NGQSAVAIPDSPTRLRREIAPRFTTPLSGKIVDQGADVSMEAIYDGFPSPEIKVEKNGGQLF-- 2183

Mouse   314 YPSEDDVEKSIVFNQDGTMTVVMKV-------RFKIKEEETVKWTTTVNRAGLSNNDEKNKKSSY 371
               ||  ..:.:.|:...:|:.:|.       |:.:....||..:|       |..|...||:.:
  Fly  2184 ---ED--AHTRISNKCNRVTIELKQVGVGDAGRYAVTASNTVGQST-------STADLVVKKTIF 2236

Mouse   372 P---GKTDYGPSS-------LKLEACSLPEDIVDTTQ-----------------QGS----LTEE 405
            |   |:......|       :::|...|||..|...:                 ||:    :.|:
  Fly  2237 PPVFGRRLQAQVSKKGEKLTMEVEVTGLPEPTVTWLKDDKPLKDAGISEHRLLAQGNSYRLIIEK 2301

Mouse   406 ENTQMTEQQALSCSSASWENASM-ETDIQESQKQVKHFYRPPTPGPRRMRQ-KKSVI---GTVTV 465
            ..|..:.:..:..::|..|..|: :..|.|             |.|.|::: .|:::   |.|..
  Fly  2302 AQTTDSGKYMVRATNAGGEAKSIADCAILE-------------PSPERLQEVVKTIVYETGPVAP 2353

Mouse   466 VSE--TEVQEKQFSYSEERKGGEKSEYHMFTHSCSKMSSVSNKLVQIGSDNEMESALERTRESGS 528
            .||  |||| ||...||.::                  |..|...::.|.|::.         |.
  Fly  2354 ASEFKTEVQ-KQIQNSENQQ------------------SYQNSQTEVTSANDLH---------GL 2390

Mouse   529 LKSQAINAGAIEITSQKVLKMCH-NNAL--------PSTAPENSVVEEGTDNSAVSGTATIKHFR 584
            .:|:.|...  ..|::..:::.| :|.|        |.|...|..:      :..:.|||:    
  Fly  2391 SESKVITEH--RCTTEATMRLEHKSNYLDLPELTTRPKTPTTNDTI------TITTNTATV---- 2443

Mouse   585 TCGNANDSFSSITADSTPTSVNNYSNDRNISELPSVGSPVLTMRLVNEFAHCGLTEKPENRKKVL 649
                     |....|.|..::.|.:........|.|.....|..:...|.     ::.:...:.|
  Fly  2444 ---------SMDQPDLTQPTITNTTTTNTTKVPPPVPPKPCTPVVATTFG-----QQQQQPPQTL 2494

Mouse   650 SSSASKKKKKKSQQRMITSN---------DKKKVIE-----TKGPPNIAGKIPRAGTTAQERLLQ 700
            :|:    :.::|:.:..||:         |::.:|:     |..|.:...:.|:|.:.|:|    
  Fly  2495 TST----RYEQSEHKSTTSSSSFDYFKKIDEETIIQRPNPLTFKPLDTVVRQPQAQSLAEE---- 2551

Mouse   701 ESDCPDKGGRVCEQGLNISPMAIESNNFFPKSNPTFSKNFYKNKLNTFQNPKTQKLLAKRKSRPR 765
                                  :.|.|..|...|.|.           .:|||:      :|.|:
  Fly  2552 ----------------------LRSLNLIPGDAPEFC-----------YSPKTE------RSEPK 2577

Mouse   766 KIVSTERLRKQEIGQEDKILLHSDSKLCESHLEKQSLFHVFNILEEDQKVLHRPPFQVEKVARNL 830
            ..:.||:::                                 ||.|.|.  ..||.|        
  Fly  2578 IPLITEKIK---------------------------------ILSEVQP--KEPPPQ-------- 2599

Mouse   831 KGMAKKSLVPKVNDLHIMLRNQKKQMGVKLKSGAEVSEQHVTTRADPLA--SLKKPDFPEGIPHH 893
               ....:.|....|..:.........||::.|     |.:...|..||  :.:.|..|...|..
  Fly  2600 ---GGVPVFPPPLGLQTVQHESTTTKEVKVEYG-----QPIVRPAAVLATPAQQNPRSPSPKPSA 2656

Mouse   894 SGKSYVKRWLQNINSYPDFEHRKSGPLCQNRSDVVNYNRNGFLGNNLHTTSSKGNGFLMESNKSK 958
            .|.:..:.|                                                      :.
  Fly  2657 EGVAMSRLW------------------------------------------------------TP 2667

Mouse   959 TKNDNWSGNTNQETGKSLVAK----DNGEELNKHHCESQNGSLYDSYLVSLHDNCTLSQTTINEP 1019
            |....::.:..|::.|::::|    ...:|||.            .:||        :|...:.|
  Fly  2668 TGVTGYTSDVEQKSEKTVISKLATPTPTKELNA------------PFLV--------NQIAKSIP 2712

Mouse  1020 STK---SHL---SIEKSRPEVKLVYQEMNFA-----TKRQSIEVAIQVDTMGENVLKDYL--PAL 1071
            .|.   :||   .:|...|      .|:.||     |:|:|:     |:||.:.:.::.:  |:.
  Fly  2713 PTTAPVTHLVNVELEPGTP------PEICFAPKVEETRRRSL-----VETMEQKLEQNLIQGPSK 2766

Mouse  1072 LLRH-LEAFVPNNQKHQNGISQIPGSLAEVVFPSVIDNSS---------TNLLLAWLLVLNLKRT 1126
            :|.| :....||.              |..|.|..:.|::         |.|           ..
  Fly  2767 VLPHSVPTLTPNT--------------AAPVQPKPLGNTTYRPPPPVLPTRL-----------GV 2806

Mouse  1127 MNSFCQSDAHKMTNRPS---------------ETAALLEVLKHVAITEEADDLKAAVANLMESTK 1176
            ..|..:||.:|.:...|               ||:  .:...:.|.|||....:.:.::..| ||
  Fly  2807 YESDYESDRYKYSGSESDVEPGIRKQPQLTTMETS--FKSSGYTADTEEHSSYRKSESSFYE-TK 2868

Mouse  1177 TCSGSSGREQ-----------DMLPVNCTASSL----HSVDECNENGSAQKTLLDEGY-----SV 1221
            :.|...|..|           ...|:..||...    ..|.....|.|:|:.   :||     |:
  Fly  2869 SSSTMGGAPQLQTQFPKLQPEPPAPIYFTAKPQPQVPPQVPPSQSNVSSQEA---KGYKYTSSSM 2930

Mouse  1222 MGDCTSEMVSKSCNSSCEMHMVSKTNPPKQVDDQSDGLLTSNSCTVSQRSTGACFLTDGVYSHEA 1286
            ..:.:..|.|.|.:|..|....|.:.||.        ::|..|...:||.|.|...:|  ||.|.
  Fly  2931 TSNYSHNMQSSSSSSHHETKFSSTSAPPP--------VVTYPSPIPAQRKTPAAEFSD--YSSEI 2985

Mouse  1287 CAQKEGVYEGACLSDETHIPIRDCHTIHSVHSKENKCTDDLESTEELKTVDKVPKGLSILADSMY 1351
                          ||         ...|| |:.|      ||..|:       ||..::.....
  Fly  2986 --------------DE---------RFRSV-SRAN------ESDAEI-------KGYRVVFPPTP 3013

Mouse  1352 KNDSNVSTFQNVNKLSSQRTLLSKTYLD---SDKDYS-----PL-EEFQNCPRKKIVNKKKSISS 1407
            ...:|::|    |...|...:::.:.::   :.:||:     |: :|.::..:.:..:|:.....
  Fly  3014 TPRTNIAT----NGHKSPVVVITPSPMEFEPTPQDYARPKFEPISKEIRHEIKTETSSKQSKFMQ 3074

Mouse  1408 DKEESRTSEEPRSITNSMTSSERNAISELESFEELESQDTSIFN------MNVRAEKKSTKETMQ 1466
            ::::::...:|:.:.....::.:   .:.:...:..|:.|..:|      |:|......||..||
  Fly  3075 NQQQNQPVFKPKPVAAKFIAATQ---QQQQKQPQATSRPTMYYNAVAGAPMHVAKVATETKNVMQ 3136

Mouse  1467 KQSEARMSSELINVSGRKII-----EQERRNTAILE----------TTARGQVTPPSLAFCYDSN 1516
            .......|..::|:...|.|     .||:|:..|||          |.:|....||..       
  Fly  3137 MHESTESSQRVVNMQQTKRIIHFDSPQEQRDQQILEPFPYSPATSRTPSRQSHLPPPA------- 3194

Mouse  1517 KNTEKEISEGETKMRVKKMVDSMENESYSESSLNFKKHHRSPGTLDWSDYGSDSESGYPCKASSN 1581
              |..:...||.:            ||..||.::..:....     ||.||.....|:       
  Fly  3195 --TPTKFVPGEFR------------ESDYESEIDGARIQPL-----WSPYGDGMTKGF------- 3233

Mouse  1582 SHNDDSGQEKEPTRGI-----VKRAIEKLYGKAEIIKPPFFHGSIHKSQVCPYNSVEVQCAKKTN 1641
                   :...|.:|.     :.|..|::....|..:.|.....||         |::...:|..
  Fly  3234 -------RRVAPPQGAGRSCSLPRTYERVLSPMEFDRGPEMPSKIH---------VDINTLRKEQ 3282

Mouse  1642 FYESECQSLVSSEQVSRSSLIFQE--------FPQVDANGMGDSFGDSSIENVTKSSAHDRVFTE 1698
            ...|...:...::.::|::.:.|:        ..|:|..|....:|.||::.            :
  Fly  3283 RGGSTVTTQNRTQSLNRNTTMRQQQQQQQQQSMDQIDRAGTLPRYGYSSLQQ------------Q 3335

Mouse  1699 KEN-GKLIDNGKWLLRENHLWRVSSDNPGMYGNADTTSVDTLIDKNSIEVPYSHFGELAPGPTMA 1762
            .|| |:.:  |...|:::|                     ..:|..|.|:..|....:.||...|
  Fly  3336 AENQGRRM--GSTFLQKSH---------------------QFVDDVSREIRSSASNGIRPGFKRA 3377

Mouse  1763 --ELSSSEIEEMTQPLEV-----KC-------NYFNFPHGSDSEPFGEDFPDAQNKTCPKEKIPN 1813
              |.||.:.:.......|     ||       .||.:..|.:   ||..||...:|         
  Fly  3378 PSEGSSQQPQAFRDESRVSQYGTKCVDPNTGLIYFKYDFGYE---FGILFPGEGHK--------- 3430

Mouse  1814 HHTEEKGNYPSERLCTSVTQAFVSAGNKVHPVCSDAIKTQPL---PGSNITHGALQEGDSLDKLY 1875
                         ..:|...:..|:.:...|:.:......||   ||:.                
  Fly  3431 -------------FVSSQWNSSGSSNSNAKPIQNGRHSPYPLKLPPGNE---------------- 3466

Mouse  1876 ALCGQHCPILTVIIQPVNEESRGFAYRKDSDIENSLDFQLWMKIYPFMPQ---SKKHVFRSDGRN 1937
                        ::.||..|.....|..|::::.....:.|....|..|:   |.|......|.:
  Fly  3467 ------------LVIPVQHERSAQGYSSDNEVQRRSQTRNWSTTKPMAPRTINSHKRYSLPSGHS 3519

Mouse  1938 VSVGEEFAGNVIGDLCDQLYFKS-------MIDLVDQRANSLGKEINLKKFQLYLKKS-FSDPLS 1994
            :.:.           .|:|:.::       ||..|.:..|:.....:|.:.:|..::. |..||.
  Fly  3520 LDIH-----------LDRLHAQAPRLPPDQMIRTVPELPNTEPVNAHLSRDELAQRQPLFITPLK 3573

Mouse  1995 TSLLVVENRNS----VSLSPS---SWTDN 2016
            ...:.|.....    |...|.   :||.|
  Fly  3574 DIAVGVGGTARFECIVQAHPQPQVNWTHN 3602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rp1NP_035413.1 DCX 35..110 CDD:176357 23/131 (18%)
DCX 157..232 CDD:176357 16/93 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 358..379 6/23 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 643..688 9/58 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 863..887 6/25 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1400..1430 2/29 (7%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1572..1595 2/22 (9%)
zorminNP_001261317.1 SPEC 126..332 CDD:238103
SPEC <504..641 CDD:295325
COG1340 960..1298 CDD:224259
RILP-like <1190..1315 CDD:304877
MAP7 1233..1365 CDD:283355
I-set 1390..1479 CDD:254352
IGc2 1403..1469 CDD:197706
I-set 1491..1580 CDD:254352
IGc2 1504..1570 CDD:197706
I-set 1589..1675 CDD:254352
Ig 1605..1675 CDD:299845
I-set 1702..1786 CDD:254352 3/18 (17%)
Ig 1713..1786 CDD:299845 3/18 (17%)
I-set 1811..1902 CDD:254352 14/90 (16%)
Ig 1828..1892 CDD:143165 10/63 (16%)
I-set 1927..2015 CDD:254352 9/87 (10%)
IGc2 1940..2005 CDD:197706 7/64 (11%)
I-set 2142..2231 CDD:254352 20/102 (20%)
Ig 2158..2231 CDD:299845 16/86 (19%)
I-set 2238..2325 CDD:254352 14/86 (16%)
Ig 2254..2324 CDD:299845 11/69 (16%)
I-set 3566..3655 CDD:254352 9/37 (24%)
Ig 3583..3650 CDD:143165 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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