DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG45065 and Chdh

DIOPT Version :9

Sequence 1:NP_001285251.1 Gene:CG45065 / 19835504 FlyBaseID:FBgn0266435 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001129712.1 Gene:Chdh / 218865 MGIID:1860776 Length:596 Species:Mus musculus


Alignment Length:581 Identity:220/581 - (37%)
Similarity:314/581 - (54%) Gaps:60/581 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TVIRRQYDFVVIGGGSAGAVVANRLSEVRNWTVLLLEAGGDET---------EISDVPALAGYLQ 93
            :|.:.:|.|||:|.||||.|:|:||:|..|..|||||||..:.         :|....||...|.
Mouse    37 SVGKDEYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLC 101

  Fly    94 LTELDWKYQTTPSSTRQYCQAMKGDRCFWPRGKVLGGSSVLNAMVYVRGSKNDYNHWASLGNPGW 158
            ..:.:|.|.|.|.      ..|.....:||||:|.||||.||||||:||...|||.|...|..||
Mouse   102 DDKYNWYYHTEPQ------PGMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGW 160

  Fly   159 DYDSMLKYFLKSEDVRNPYLAKTPYHETGGYLTVQEAPWRTPLSIAFLQAGIEMGYE-NRDINGA 222
            ||...|.||.|::   ...|....|....|.|.|.......||..|||||..:.||. ..|:||.
Mouse   161 DYAHCLPYFRKAQ---RHELGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGF 222

  Fly   223 QQTGFMLTQSTIRRGARCSTGKAFIRPVRQRKNFDVLLHAEATRILFDKQKRAIGVEYMRGGRKN 287
            ||.||.....|:.:|.|.||..|::.||..|.|....:....:|:||: ..||:||||::.|:::
Mouse   223 QQEGFGWMDMTVHQGKRWSTACAYLHPVLSRPNLRAEVQTLVSRVLFE-GTRAVGVEYIKDGQRH 286

  Fly   288 VVFVRREVIASAGALNTPKLLMLSGVGPAEHLQEHNIPVISDLP-VGNNMQDHVGLGGLTFVVDA 351
            ..:|.||||.|.||:|:|:||||||||.|:.|::.:|||:..|| ||.|:|||:.:    :|..|
Mouse   287 KAYVSREVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEV----YVQQA 347

  Fly   352 ---PLTV--TRNRFQTIPVSMEYILRERGPMTFSGVEGVAFLNTKYQDPSVDWPDVQFHFCPSSI 411
               |:|:  .:...:.:.:.:|::....|....:.:|...|:.::   |.|..||:||||.||.:
Mouse   348 CTQPITLHSAQKPLRKVCIGLEWLWSYTGDGATAHLETGGFIRSR---PGVPHPDIQFHFLPSQV 409

  Fly   412 NSDGGEQIRKILNLRDGFYNTVYKPLQHSETWSILPLLLRPKSTGWVRLNSRNPQHQPKIIPNYF 476
            ...|                  .||.| .|.:.:....:|..|.||::|.|.||:..|.|.|||.
Mouse   410 IDHG------------------RKPTQ-QEAYQVHVGTMRATSVGWLKLRSANPRDHPVIHPNYL 455

  Fly   477 AHQEDIDVLVEGIKLAINVSNTQAFQRF-GSRLHNIPLPGCRHLPFQSNEYWACCIKEFTFTIYH 540
            :.:.|::...:.::|:..:...:|...| |..|.    || .|:  ||::.....::....:.||
Mouse   456 STETDVEDFRQCVRLSREIFAQEALAPFRGKELQ----PG-SHV--QSDKEIDAFVRAKADSAYH 513

  Fly   541 PAGTCRMGPSWDVTAVVDPRLRVYGVSGVRVVDASIMPTIVNGNPNAPVIAIGEKASDLIK 601
            |:.||:||.|.|.|||||.:.:|.||..:|||||||||::|:||.|||.:.|.|||:|:||
Mouse   514 PSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMIAEKAADIIK 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG45065NP_001285251.1 PRK02106 42..601 CDD:235000 217/575 (38%)
NADB_Rossmann 117..339 CDD:304358 100/223 (45%)
GMC_oxred_C 452..596 CDD:282984 57/144 (40%)
ChdhNP_001129712.1 PRK02106 42..588 CDD:235000 219/576 (38%)
NAD_binding_8 47..>76 CDD:290186 18/28 (64%)
GMC_oxred_N 118..341 CDD:279121 102/226 (45%)
GMC_oxred_C 432..569 CDD:282984 57/143 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 241 1.000 Domainoid score I2232
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 336 1.000 Inparanoid score I2378
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52181
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm42468
orthoMCL 1 0.900 - - OOG6_100146
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3702
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.900

Return to query results.
Submit another query.