DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rem1 and Rgk1

DIOPT Version :9

Sequence 1:NP_033073.1 Gene:Rem1 / 19700 MGIID:1097696 Length:297 Species:Mus musculus
Sequence 2:NP_725875.3 Gene:Rgk1 / 14462605 FlyBaseID:FBgn0264753 Length:1379 Species:Drosophila melanogaster


Alignment Length:334 Identity:107/334 - (32%)
Similarity:152/334 - (45%) Gaps:79/334 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse    23 LSSRGHQPGRLCTAPSAPSQHPRLGQSVSLNPPV-RKPSPAQDGWSSESSDSEGSWEALYRVVLL 86
            |.||..:......:.::.::|....|.:|....| .:.|.|....||.|:...|.    |||::|
  Fly  1066 LKSRRSRSNNSVASSNSSTEHLTTQQQLSAPASVSARTSLASSRESSTSNPGNGP----YRVLML 1126

Mouse    87 GDPGVGKTSLASLFAEKQ-----DRDPHEQLGGVYERTLSV--DGEDTTLVVMDTWEAEKLDESW 144
            |.|.|||:||.|.|...:     |....::.|   |:.:||  .||::.|:.:|....|     .
  Fly  1127 GGPAVGKSSLVSQFMTSEYLHAYDTSIDDESG---EKAVSVLLSGEESELIFIDHGYTE-----M 1183

Mouse   145 CQESCL--QAGSAYVIVYSIADRSSFESASELRIQLRRTHQ-ANHVPIILVGNKADLARCREVSV 206
            ..:.||  .....|.::||.|||||| |.:|..:|:..|:| .....:|||.|||||||.|.|:.
  Fly  1184 TPDECLTNYDPHGYCVIYSAADRSSF-SVAEQVLQVLWTNQNIAQKAVILVSNKADLARSRLVTS 1247

Mouse   207 EEGRACAVVFDCKFIETSATLQHNVTELFEGVVRQLRLRRQD----------------------- 248
            |||:|.|..:||||||||..:.|||.||..|::.|:||:.::                       
  Fly  1248 EEGKAMATAYDCKFIETSVGINHNVDELLVGLLSQIRLKLENPEKSRDLFRKRSIRKSKRRACSP 1312

Mouse   249 ------NA---------APETP------SPRR----RASLGQRARRFLARLTARSARRRALKARS 288
                  ||         |..||      |||:    |.|...:.:..|.|:..|.       ::|
  Fly  1313 LNAGCLNANTPLGPLGEAVATPPGSAQSSPRKYRGSRTSTSLKVKGLLGRVWTRD-------SKS 1370

Mouse   289 KSCHNLAVL 297
            |||.||.||
  Fly  1371 KSCENLHVL 1379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rem1NP_033073.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..73 12/50 (24%)
RGK 81..297 CDD:206715 92/273 (34%)
small_GTPase 81..245 CDD:197466 72/173 (42%)
Calmodulin-binding 267..286 3/18 (17%)
Rgk1NP_725875.3 DUF2967 459..715 CDD:288079
P-loop_NTPase 1121..1379 CDD:304359 92/273 (34%)
small_GTPase 1121..1286 CDD:197466 72/173 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8675
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45775
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5084
SonicParanoid 1 1.000 - - X743
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.040

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