DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdh5 and Adhr

DIOPT Version :9

Sequence 1:XP_006513448.1 Gene:Rdh5 / 19682 MGIID:1201412 Length:320 Species:Mus musculus
Sequence 2:NP_001027272.1 Gene:Adhr / 3772432 FlyBaseID:FBgn0000056 Length:272 Species:Drosophila melanogaster


Alignment Length:147 Identity:37/147 - (25%)
Similarity:58/147 - (39%) Gaps:39/147 - (26%)


- Green bases have known domain annotations that are detailed below.


Mouse   108 LVNNAGVAGIIGPTPWLTQDDFQRVLSVNTLGPIGVTLALLPLLQQ----ARGRVVNITSVLGR- 167
            |:|.|.:.         .:::....::.|..|.:.....:||.:.:    ..|.:||:|||:|. 
  Fly    89 LINGATLC---------DENNIDATINTNLTGMMNTVATVLPYMDRKMGGTGGLIVNVTSVIGLD 144

Mouse   168 ----IAANGGGYCVSKFGLEAFSDSLRRDM--APFGVQVSIVEPGFFRTPVTNLESLESTLKACW 226
                ..|    |..||||:..|:.||...:  :..||.|..|..|..|..|      :..|||. 
  Fly   145 PSPVFCA----YSASKFGVIGFTRSLADPLYYSQNGVAVMAVCCGPTRVFV------DRELKAF- 198

Mouse   227 ARLPPAIQAHYGEAFLD 243
                    ..||::|.|
  Fly   199 --------LEYGQSFAD 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rdh5XP_006513448.1 NADB_Rossmann 30..308 CDD:419666 37/147 (25%)
AdhrNP_001027272.1 ADH_SDR_c_like 7..248 CDD:187584 37/147 (25%)
adh_short 7..195 CDD:278532 30/124 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR43313
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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