DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbm4 and x16

DIOPT Version :10

Sequence 1:NP_033058.2 Gene:Rbm4 / 19653 MGIID:1100865 Length:361 Species:Mus musculus
Sequence 2:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster


Alignment Length:199 Identity:50/199 - (25%)
Similarity:85/199 - (42%) Gaps:31/199 - (15%)


- Green bases have known domain annotations that are detailed below.


Mouse    72 NKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDN 133
            ::..:..|::||::.......:|...|..||.:....|.::   :|||..|.|.||.:|:||||.
  Fly     2 SRHPSDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDG 66

Mouse   134 TEFQGKRMHVQLSTSRLRTAPGMG---------------DQSG-------CYRCGKEGHWSKECP 176
            ....|:|..|:|||.:...:.|.|               |:.|       ||.||..||:::.|.
  Fly    67 RTVCGRRARVELSTGKYARSGGGGGGGGGGGGGGGLGGRDRGGGGRGDDKCYECGGRGHFARHCR 131

Mouse   177 IDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNTYGALDAYYKRCRAARSYEAVAAAAASA 241
             :|..|....:..::......|...|.|...:...:.:.|::..     |:.||.......:||.
  Fly   132 -ERKARQRRRSNSFSRSRSTSRRRRTRSKSGTRSRSRSAGSVGR-----RSGRSNGRDENGSASR 190

Mouse   242 YSNY 245
            ||::
  Fly   191 YSDH 194

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbm4NP_033058.2 RRM1_RBM4 2..68 CDD:410018
RRM2_RBM4 78..144 CDD:410019 22/68 (32%)
PTZ00368 <145..>181 CDD:173561 15/57 (26%)
ZnF_C2HC 161..176 CDD:197667 7/21 (33%)
Interaction with TNPO3. /evidence=ECO:0000250 196..361 11/50 (22%)
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 25/71 (35%)
Blue background indicates that the domain is not in the aligned region.

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