Sequence 1: | XP_006510170.1 | Gene: | Robo3 / 19649 | MGIID: | 1343102 | Length: | 1403 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001259868.1 | Gene: | robo2 / 44522 | FlyBaseID: | FBgn0002543 | Length: | 1519 | Species: | Drosophila melanogaster |
Alignment Length: | 1630 | Identity: | 432/1630 - (26%) |
---|---|---|---|
Similarity: | 645/1630 - (39%) | Gaps: | 425/1630 - (26%) |
- Green bases have known domain annotations that are detailed below.
Mouse 21 RDISNSSELLFGFNSSLAALNPSLLPPGDPSLNG-SRVGP-EDAMPRIVEQPPDLVVSRGEPATL 83
Mouse 84 PCRAEGRPRPNIEWYKNGARVATAREDPRAHRLLLPSGALFFPRIVHGRRSRPDEGVYTCVARNY 148
Mouse 149 LGAAASRNASLEVAVLRDDFRQSPGNVVVAVGEPAVMECVPPKGHPEPLVTWKKGKIKLK---EE 210
Mouse 211 EGRITIRGGKLMMSHTFKSDAGMYMCVASNMAGERESGAAELVVLERPSFLRRPINQVVLADAPV 275
Mouse 276 NFLCEVQGDPQPNLHWRK--DDGELPAGRYEIRSDHSLWIDQVSSEDEGTYTCVAENSVGRAEAS 338
Mouse 339 GSLSVHVPPQFVTKPQNQTVAPGANVSFQCETKGNPPPAIFWQKEGSQVLLFPSQ-------SLQ 396
Mouse 397 PMGRLLVSPRGQLNITEVKIGDGGYYV-CQAVSVAGSILAKALLEIKGASIDGLPPIILQGPANQ 460
Mouse 461 TLVLGSSVWLPCRVIGNPQPNIQWKKDERWLQG------DDSQFNLMDNGTLHIASIQ-EMDMGF 518
Mouse 519 YSCVAKSSIGEATWNSWLRKQEDWGASPGPATGPSNP-------------PGPPSQPIVTEVTAN 570
Mouse 571 SITLTW-KPNPQSGATATSYVIEAFSQAAGNTWRTVADGVQLETYTISGLQPNTIYLFLVRAVGA 634
Mouse 635 WGLSEPSPVSEPVQ------------TQADSSLSRPAEDPWKGQRGLAEVAVRMQEPTVLGPRTL 687
Mouse 688 QVSW-TVDGPVQLVQGFRVSWRIAGLDQGSWTMLDLQSP--HKQSTVLRGLPP------------ 737
Mouse 738 ---GAQIQIKVQV---------QGQEGLGAESPFVTR---------------------------- 762
Mouse 763 -SIP------------------EEAPSGPPQGVAVALGGDRNSSVTVSWEPPLPSQRNGVITEYQ 808
Mouse 809 IWCLG-----NESRFHLNRSAAGWARSVTFSGLLPGQIYRALVAAATSAGVGVASAPVLVQLPFP 868
Mouse 869 PAAEPGPEVSEGL---AERLAKVLRKPAFLAGSSAACGALLLGFCAALYRRQK----QRKELS-- 924
Mouse 925 --HYTASFAYTPAVSFPHSEGLSGSSSRPPMGLGPAAYPWLADS-----WPHPPRSPSAQEPRGS 982
Mouse 983 -------C-CPSNPDPDDRYYNEAGISLYLAQTARGANASGEGPVYSTIDPVGEELQTFHGG--- 1036
Mouse 1037 ---FPQHSSGDPSTWSQY-----APPEWSEGDSGARGGQGKLLGKPVQMPSLSWPEALPPPPPSC 1093
Mouse 1094 ELSCPEGPEEELKGSSDLEEWCPPVPEKSHLVGSSSSGACMVAPAPRDTPSPTSSYG-------- 1150
Mouse 1151 ------QQSTATLTPSPPDPPQ-----PPTDIPHLHQMPRRVPL-----GPSSPLSVSQPALSSH 1199
Mouse 1200 DGRPVGLGAGPVLSYHASPSPVPSTASSAPGRTRQVTGEMTPPLHGHRARIRKK--PKALPYRRE 1262
Mouse 1263 HSP---------------------------------GDLPPPPLPPPEEETSWPLGLRAAGSMSS 1294
Mouse 1295 LER------ERSGERRVVQAVPLGAQPLGAQRGPHPDAALL----------------GCAAEEAW 1337
Mouse 1338 LPYGRPSFLSHGQGTSTCSTAGSNSSRGSN-------SSRGSRGSRGPGRSRSRSRSQSQSQRPG 1395
Mouse 1396 RNRRE 1400 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Robo3 | XP_006510170.1 | Ig | 64..162 | CDD:386229 | 45/97 (46%) |
Ig | 170..254 | CDD:386229 | 36/86 (42%) | ||
Ig | 275..343 | CDD:386229 | 30/69 (43%) | ||
Ig4_Robo | 361..450 | CDD:143203 | 26/96 (27%) | ||
Ig | 451..531 | CDD:386229 | 36/86 (42%) | ||
FN3 | 564..649 | CDD:238020 | 36/97 (37%) | ||
FN3 | 678..761 | CDD:238020 | 20/109 (18%) | ||
FN3 | 771..864 | CDD:238020 | 27/97 (28%) | ||
robo2 | NP_001259868.1 | Ig1_Robo | 90..185 | CDD:143317 | 45/98 (46%) |
I-set | 91..184 | CDD:254352 | 45/96 (47%) | ||
I-set | 190..279 | CDD:254352 | 38/89 (43%) | ||
Ig2_Robo | 193..279 | CDD:143201 | 36/86 (42%) | ||
I-set | 283..370 | CDD:254352 | 35/86 (41%) | ||
Ig | 300..370 | CDD:299845 | 30/69 (43%) | ||
Ig | 388..>457 | CDD:299845 | 24/74 (32%) | ||
I-set | 479..561 | CDD:254352 | 36/86 (42%) | ||
Ig | 496..561 | CDD:143165 | 25/69 (36%) | ||
FN3 | 588..681 | CDD:238020 | 41/92 (45%) | ||
FN3 | <817..856 | CDD:238020 | 1/38 (3%) | ||
fn3 | 864..952 | CDD:278470 | 26/89 (29%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 104 | 1.000 | Domainoid score | I6680 |
eggNOG | 1 | 0.900 | - | - | E1_KOG4222 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000772 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_101537 | |
Panther | 1 | 1.100 | - | - | O | PTHR12231 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X493 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
9 | 8.770 |