DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab4b and Rab14

DIOPT Version :9

Sequence 1:NP_083667.1 Gene:Rab4b / 19342 MGIID:105071 Length:213 Species:Mus musculus
Sequence 2:NP_788056.1 Gene:Rab14 / 34840 FlyBaseID:FBgn0015791 Length:239 Species:Drosophila melanogaster


Alignment Length:214 Identity:123/214 - (57%)
Similarity:151/214 - (70%) Gaps:11/214 - (5%)


- Green bases have known domain annotations that are detailed below.


Mouse     5 YDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 69
            |:::||:::||..|.|||||||||.|.||..:..||||||||:|::.|..|.:||||||||||||
  Fly    32 YNYIFKYIIIGDMGVGKSCLLHQFTEKKFMANCPHTIGVEFGTRIIEVDDKKIKLQIWDTAGQER 96

Mouse    70 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFL 134
            ||:|||||||||||||:|||||.|.|||.|::||||.|.|.:|:.|:.|.|||.||:..||||:.
  Fly    97 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSDLESTREVTYE 161

Mouse   135 EASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYGDISLRQLRQ 199
            ||..||.||.|||||.||:||:|||||||:.||.|...|..|.||.....||:|:      :..|
  Fly   162 EAKEFADENGLMFLEASAMTGQNVEEAFLETARKIYQNIQEGRLDLNASESGVQH------RPSQ 220

Mouse   200 PR----SAQAV-APQPCGC 213
            |.    |::|. |...|.|
  Fly   221 PSRTSLSSEATGAKDQCSC 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4bNP_083667.1 Rab4 9..169 CDD:206696 107/159 (67%)
Effector region. /evidence=ECO:0000250 37..45 5/7 (71%)
Rab14NP_788056.1 Rab14 34..199 CDD:133322 108/164 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1146851at2759
OrthoFinder 1 1.000 - - FOG0001311
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X808
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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