DRSC/TRiP Functional Genomics Resources

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Protein Alignment Igdcc3 and robo2

DIOPT Version :9

Sequence 1:NP_001344186.1 Gene:Igdcc3 / 19289 MGIID:1202390 Length:813 Species:Mus musculus
Sequence 2:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster


Alignment Length:799 Identity:200/799 - (25%)
Similarity:280/799 - (35%) Gaps:242/799 - (30%)


- Green bases have known domain annotations that are detailed below.


Mouse    31 PLLLLLLLLPLPAPSLGLGHSAEL-AFSVE-------PNDDIANPGQPIVLGCKVEGTPPVQVSW 87
            ||||||         .||....:: |...|       |.|.......|....|:.||.|...:.|
  Fly    69 PLLLLL---------AGLNGLTQVGALKGENPRIIEHPMDTTVPKNDPFTFNCQAEGNPTPTIQW 124

Mouse    88 RKNGAEL--PEGTHTTLLANGSLL---IHHFRLEQGGSPSDEGDYECVAQNRFGLLVSRKARLQA 147
            .|:|.||  ..|:|..:|..|.|.   :.|.|.|     ||.|.|.|.|:|.||:..||.|.||.
  Fly   125 FKDGRELKTDTGSHRIMLPAGGLFFLKVIHSRRE-----SDAGTYWCEAKNEFGVARSRNATLQV 184

Mouse   148 ATMSD-FHVHPQAVTGEEGGVARFQCQI-HGLPKPLITWEKNRVPID-TDDERYTLLPKGVLQIT 209
            |.:.| |.:.|......:|.||..:|.. .|.|:|.|:|.||...:: ..::|..::..|.|.|.
  Fly   185 AFLRDEFRLEPANTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDGGNLAIQ 249

Mouse   210 GLRAEDSGIFHCVASNIASVRVSHGARLTVSGSGSGTYKEPTILVGPENLTLTVHQTAVLECVAT 274
            ..|..|.|.:.||..|:...|.|..|.|.|       :..|.::.||:|.|..|..:.|.:|...
  Fly   250 EARQSDDGRYQCVVKNVVGTRESATAFLKV-------HVRPFLIRGPQNQTAVVGSSVVFQCRIG 307

Mouse   275 GNPRPIVSWSR-LDGRPIGVEGIQVLGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVV 338
            |:|.|.|.|.| ..|..:.:..:.||...:|.:.|||::..|.|.|.|:.....:  ||.|.|.|
  Fly   308 GDPLPDVLWRRTASGGNMPLRRVHVLEDRSLKLDDVTLEDMGEYTCEADNAVGGI--TATGILTV 370

Mouse   339 QAPAEFVQHPQSISRPAGTTAMFTCQAQGEPPPHVTWLKNG------------------------ 379
            .||.:||..|::.....|...:|.|||.|.|.|.:.|...|                        
  Fly   371 HAPPKFVIRPKNQLVEIGDEVLFECQANGHPRPTLYWSVEGNSSLLLPGYRDGRMEVTLTPEGRS 435

Mouse   380 ------------------QVLGAGGHVRLKN-------------------NNSTL---------- 397
                              ..|.|.|.|..:.                   .|.||          
  Fly   436 VLSIARFAREDSGKVVTCNALNAVGSVSSRTVVSVDTQFELPPPIIEQGPVNQTLPVKSIVVLPC 500

Mouse   398 ---------------------------SISGVGP---------EDEAIYQCVAENIAGSSQASAR 426
                                       ::|..|.         |||.:|.|||.|..|.|..|..
  Fly   501 RTLGTPVPQVSWYLDGIPIDVQEHERRNLSDAGALTISDLQRHEDEGLYTCVASNRNGKSSWSGY 565

Mouse   427 LTV----------LWAEGL---PGPPRNVRAVSVSSTEVRVSWSEP-LAHTKEIIGYVLHI-RKA 476
            |.:          ..|..|   ||||...:.|......|.:||:.. ......::|||:.: .|.
  Fly   566 LRLDTPTNPNIKFFRAPELSTYPGPPGKPQMVEKGENSVTLSWTRSNKVGGSSLVGYVIEMFGKN 630

Mouse   477 ADSPKLEYQEAVSKSTFQHLVRDLEPSTAYSFYIKAYTPRGASLASVPTLASTLGEAPVPPPLSV 541
            .....:.....|..:||..  ..|.|...|.|.|:|....|.||.|           |:..|::|
  Fly   631 ETDGWVAVGTRVQNTTFTQ--TGLLPGVNYFFLIRAENSHGLSLPS-----------PMSEPITV 682

Mouse   542 -----------------------------RLLGSSSLQLLWKPWPRLAQHNG----GFKLFYR-- 571
                                         .::.|:|::|.|:      ..||    ||.::.|  
  Fly   683 GTRYFNSGLDLSEARASLLSGDVVELSNASVVDSTSMKLTWQ------IINGKYVEGFYVYARQL 741

Mouse   572 -------PVSATSFTGPILLPGTVSSYNLSQLDPSTVYEVK--LLA-------YNQHGDG----- 615
                   |...||.|.|:|  |:.|:...:....|.:...|  :.|       .||.|.|     
  Fly   742 PNPIVNNPAPVTSNTNPLL--GSTSTSASASASASALISTKPNIAAAGKRDGETNQSGGGAPTPL 804

Mouse   616 NATVRFVSL---KGASERT 631
            |...|.:::   .|||..|
  Fly   805 NTKYRMLTILNGGGASSCT 823

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Igdcc3NP_001344186.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Ig 56..147 CDD:325142 34/102 (33%)
Ig 158..239 CDD:325142 25/82 (30%)
Ig_3 250..321 CDD:316449 24/71 (34%)
I-set 343..429 CDD:254352 34/192 (18%)
FN3 436..529 CDD:238020 25/94 (27%)
fn3 <556..615 CDD:306538 19/80 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 689..724
DNA_pol3_gamma3 <690..>812 CDD:331207
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 775..813
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317 34/99 (34%)
I-set 91..184 CDD:254352 33/97 (34%)
I-set 190..279 CDD:254352 27/88 (31%)
Ig2_Robo 193..279 CDD:143201 26/85 (31%)
I-set 283..370 CDD:254352 29/88 (33%)
Ig 300..370 CDD:299845 23/71 (32%)
Ig 388..>457 CDD:299845 10/68 (15%)
I-set 479..561 CDD:254352 14/81 (17%)
Ig 496..561 CDD:143165 11/64 (17%)
FN3 588..681 CDD:238020 27/105 (26%)
FN3 <817..856 CDD:238020 4/7 (57%)
fn3 864..952 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4222
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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