DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptprs and Ptp4E

DIOPT Version :9

Sequence 1:XP_006523937.1 Gene:Ptprs / 19280 MGIID:97815 Length:1920 Species:Mus musculus
Sequence 2:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster


Alignment Length:1812 Identity:417/1812 - (23%)
Similarity:650/1812 - (35%) Gaps:491/1812 - (27%)


- Green bases have known domain annotations that are detailed below.


Mouse   113 VGEITI----HAKLTVL---------------REDQLPP-GFPN-------IDMGPQLK---VVE 147
            ||.:||    ||....|               |.|..|| |||.       .|:|..:|   .:.
  Fly    58 VGILTIFLAQHANAADLVINVPNASSNANAFYRIDYSPPFGFPEPNTTIPASDIGKDIKFSRALP 122

Mouse   148 RTRTATMLCAASGNPDPEITWFKDFLPV-DPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 211
            .|.....|...:.....::||..:.... ||.|:..  .||||......:......|:|......
  Fly   123 GTEYNFWLYYTNSTHREQLTWTVNITTAPDPPANLS--VQLRSSKSAFITWRPPGSGRYSGFRIR 185

Mouse   212 SAGVRYSSPANLYVRELREVRRVAPRFSILPMSHEIMPGGNVNITCVAV---------------- 260
            ..|:........|..|..|..:::.:        |:.|||:..:...:|                
  Fly   186 VLGLTDLPFERSYSLEGNETLQLSAK--------ELTPGGSYQVQAYSVYQGKESVAYTSRNFTT 242

Mouse   261 --GSPMPYVKWMQGAEDL--------------------TPEDDM-----------PVG------- 285
              .:|..::.|.:....|                    ||:|.:           |.|       
  Fly   243 KPNTPGKFIVWFRNETTLLVLWQPPFPAGIYTHYRVSITPDDAIQSVLYVEREGEPPGPAQAAFK 307

Mouse   286 -------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAPGTPVVTENTATSITVTW 343
                   .|:...|..:|..:........|.|.|.|..:|...          ...|::|..|.|
  Fly   308 GLVPGREYNISVQTVSEDETSSVPTTARYLTVPERVLNVTFDE----------AYTTSSSFRVRW 362

Mouse   344 DSGNPDPVSYYVIEYKSKSQDGPYQIKEDITTTR------YSIGG----------LSPNSEYEIW 392
            :    .|.:|        |:...||:.  ::|:|      .:..|          |.|...||:.
  Fly   363 E----PPRTY--------SEFDAYQVM--LSTSRRIFNVPRAANGDSVYFDYPDILEPGRTYEVV 413

Mouse   393 VSAV-NSIGQGPPSESVVTRTGEQAPASAPRNVQARMLS------ATTMIVQWEEPVEPNGLIRG 450
            |..: :::...|.|..|..|         ||.|  |.|.      :..:.:.| ||.| .|....
  Fly   414 VKTIADNVNSWPASGEVTLR---------PRPV--RSLGGFLDDRSNALHISW-EPAE-TGRQDS 465

Mouse   451 YRVYY-----TMEPEHPVGNWQKHNVDDSLLT-TVGSLLEDETYTVRVLAFTSVGDGPLSDPIQV 509
            ||:.|     ..|...|.....:..:..:|.. |:.|||....|.:.|.|.:.   |..|:...:
  Fly   466 YRISYHEQTNASEVPAPFPVAAESQITTNLTEYTLDSLLAGRRYLIAVQALSK---GVASNASDI 527

Mouse   510 KTQQGVPGQPMNLRAEAKS-ETSIGLSWSAPRQESVIKYELLF-REGDRGREVGRTFDPTTAFVV 572
             |:...|..|  |..|.:| :..:.|||.:.......:||:.: |.|.|......|.:  |:..:
  Fly   528 -TRYTRPAAP--LIQELRSIDQGLMLSWRSDVNSRQDRYEVHYQRNGTREERTMATNE--TSLTI 587

Mouse   573 EDLKPNTEYAFRLAARSPQGLGAFTAVVRQRT---LQAKPSAPPQDVKCTSLRSTAILVSWRPPP 634
            ..|.|.:.|..::.|.| .|       ||...   .||....|||::...::.:..:::.|:.| 
  Fly   588 HYLHPGSGYEVKVHAIS-HG-------VRSEPHSYFQAVFPKPPQNLTLQTVHTNLVVLHWQAP- 643

Mouse   635 PETHNGALVGYSVRYR-----------------------------------PLGSEDPDPKEVN- 663
               .......|.||||                                   ..|.|.|.|.|:| 
  Fly   644 ---EGSDFSEYVVRYRTDASPWQRISGLHENEARIKDMHYGERYLVQVNTVSFGVESPHPLELNV 705

Mouse   664 NIPPTTTQILLEALE------KWTEYRVTAVAYTEVGPGPESS---------PVVVRTDEDVPSA 713
            .:||.....::..::      :|              |.|:..         |    |||:....
  Fly   706 TMPPQPVSNVVPLVDSRNLTLEW--------------PRPDGHVDFYTLKWWP----TDEEDRVE 752

Mouse   714 PPRKVEAEALNATAIRVLWRSPTPGRQH--------GQIRGYQVH-------------YVRMEGA 757
            .....:.|.|::.::|:.....:||||:        ..||....|             ::...|.
  Fly   753 FKNVTQLEDLSSPSVRIPIEDLSPGRQYRFEVQASSNGIRSGTTHLSTRTMPLIQSDVFIANAGH 817

Mouse   758 E--------------------------ARGPPRIKDIMLADAQWEMDDTAEYEMVITNLQPETAY 796
            |                          :.|.|.|||      :.::.:..|.::..:.|.|...|
  Fly   818 EQGQDETITLSYTPTPADSTRFDIYRFSMGDPTIKD------KEKLANDTERKLSFSGLTPGKLY 876

Mouse   797 SITVAAYTMKGDGARSKPKVVVTKGAVLGRPTLSVQQTPEGSLLARWEPPADAAEDPVLGYRLQF 861
            ::||  :|:.| |..|.|...:.:...|....|...|.....:...|..||....|    :.||:
  Fly   877 NVTV--WTVSG-GVASLPVQRLYRLHPLPISDLKAIQVAAREITLHWTAPAGEYTD----FELQY 934

Mouse   862 -GREDAAPATLELAAWERRFA----APAHKGATYVFRLAARGRAGLGEEAA---AALSIPEDAP- 917
             ..::.||..|:.........    .|.|   .|.|.:..|..:..|.:.|   .:..:...|| 
  Fly   935 LSADEEAPQLLQNVTKNTEITLQGLRPYH---NYTFTVVVRSGSIQGTDFADVSVSTLMRSSAPI 996

Mouse   918 -RGFPQILGAAG--------NVSAGSVLLRWLPPVPAERNGAIIKYTVSVREAGAPGPATETELA 973
             ..:..:....|        :|..|.|...| ...|||::|.|..:.::.:.|......:..|..
  Fly   997 SASYQTLTAPPGKVDYFQPSDVQPGEVTFEW-SLEPAEQHGPIDYFRITCQNADDAADVSSYEFP 1060

Mouse   974 AAAQPGAETALTLRGLRPETAYELRVRAHTRRGPGPFSPPLRYRLARDPVSPKNFKVKMIMKTSV 1038
            ..|..|     .:.||.|...|..|::|.:..|         |...|:.:           :|..
  Fly  1061 VNATQG-----KIDGLVPGNHYIFRIQAKSALG---------YGAEREHI-----------QTMP 1100

Mouse  1039 LLSWEFPDNYNSPTPYKIQYNGLTLDVDGRTTKKLITHLKPHTFYNFVLTNRGSSLGGLQ----Q 1099
            :|:...|:  .|.||.::.....|:::..|.......|....::...:..:.|.:..||:    |
  Fly  1101 ILAPPVPE--PSVTPLEVSRTSSTIEISFRQGYFSNAHGMVRSYTIIIAEDVGKNASGLEMPSWQ 1163

Mouse  1100 TVTARTAFNMLSGKPSVAPKPDNDGFIVVYLPDGQSPVTVQNYFIVMVPLRKSRGGQFPVLLGSP 1164
            .|.|.|                      |:||  ...:...|.|:.....|||            
  Fly  1164 DVQAYT----------------------VWLP--YQAIEPYNPFLTSNGSRKS------------ 1192

Mouse  1165 EDMDLEELIQDISRLQRRSLRHSRQLEVPRPYIAARFSILPAVFHPGNQKQYGGFDNRGLEPGHR 1229
                                    .||      |..|:|..|    ...|...|:.|..|..|..
  Fly  1193 ------------------------SLE------AEHFTIGTA----NCDKHQAGYCNGPLRAGTT 1223

Mouse  1230 YVLFVLAVLQKNEPTFAASPFSDPFQLDNPDPQPIVDGEEGLIWVIGPVLAVVFIICIVIAILLY 1294
            |.:.:.|.  .:|..|..:.:|.|...:..|..           ::...::.|.::.:|:.::..
  Fly  1224 YRIKIRAF--TDEDKFTDTVYSSPITTERSDTV-----------IVAATVSAVLLVAMVLVVVYC 1275

Mouse  1295 KNKPDSKRKDSEPRTKCLLNNADLAPHHPKDPVEMRRINFQTPGMLSHPPIPITDMAEHMERLKA 1359
            :::....|:.|:           ||  ..:|.:......:.||    :.|:.:.|.:||...:.|
  Fly  1276 QHRCQLIRRASK-----------LA--RMQDELAALPEGYITP----NRPVHVKDFSEHYRIMSA 1323

Mouse  1360 NDSLKLSQEYESI-DPGQQFTWEHSNLEANKPKNRYANVIAYDHSRVILQPLEGIMGSDYINANY 1423
            :...:.|:|:|.: ..|:......:||..|:||||:.|::.|||||..|||::...|||||||||
  Fly  1324 DSDFRFSEEFEELKHVGRDQACSFANLPCNRPKNRFTNILPYDHSRFKLQPVDDDDGSDYINANY 1388

Mouse  1424 VDGYRRQNAYIATQGPLPETFGDFWRMVWEQRSATVVMMTRLEEKSRIKCDQYWP-NRGTETYGF 1487
            :.|:.....:|.|||||..|..:||||.||..|..:||:||..||.|.||||||| :|....||.
  Fly  1389 MPGHNSPREFIVTQGPLHSTREEFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPVDRVAMFYGD 1453

Mouse  1488 IQVTLLDTMELATFCVRTFSLHKNGSSEKREVRHFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPP 1552
            |:|.|:.......:.:..|.:.:|  .|.|.:|||.||.|||.||||.|...:.|:|..:.....
  Fly  1454 IKVQLIIDTHYHDWSISEFMVSRN--CESRIMRHFHFTTWPDFGVPEPPQSLVRFVRAFRDVIGT 1516

Mouse  1553 DAGPIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVYGHVTLMRSQRNYMVQTEDQYGFIHEAL 1617
            |..||:|||||||||:|.||.:|.:|:.|.....||::|.|..||.:|.:|||||.||..||:.|
  Fly  1517 DMRPIIVHCSAGVGRSGTFIALDRILQHIHKSDYVDIFGIVFAMRKERVFMVQTEQQYVCIHQCL 1581

Mouse  1618 LEAVGCGNTEVPARSLYTYIQKLAQVEPGEHVTGMELEFKRLASSKAHTSRFITASL 1674
            | ||..|...:.|.||..:      ...|..||.:.||  |...:|..|.. |.|||
  Fly  1582 L-AVLEGKEHLLADSLELH------ANDGYEVTKIYLE--RQPQTKMGTLP-IRASL 1628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtprsXP_006523937.1 I-set 33..124 CDD:400151 6/14 (43%)
Ig strand A 33..36 CDD:409353
Ig strand A' 42..45 CDD:409353
Ig strand B 50..57 CDD:409353
Ig strand C 63..68 CDD:409353
Ig strand C' 71..73 CDD:409353
Ig strand D 80..84 CDD:409353
Ig strand E 86..93 CDD:409353
Ig strand F 103..111 CDD:409353
Ig strand G 114..124 CDD:409353 5/13 (38%)
IgI_2_RPTP_IIa_LAR_like 137..226 CDD:409400 18/92 (20%)
Ig strand B 152..156 CDD:409400 0/3 (0%)
Ig strand C 165..169 CDD:409400 1/3 (33%)
Ig strand E 190..194 CDD:409400 0/3 (0%)
Ig strand F 204..209 CDD:409400 1/4 (25%)
Ig strand G 216..219 CDD:409400 0/2 (0%)
IgI_3_RPTP_IIa_LAR_like 239..320 CDD:409401 21/143 (15%)
Ig strand B 253..257 CDD:409401 0/3 (0%)
Ig strand C 266..270 CDD:409401 0/3 (0%)
Ig strand E 287..291 CDD:409401 1/3 (33%)
Ig strand F 299..304 CDD:409401 0/4 (0%)
Ig strand G 312..315 CDD:409401 1/2 (50%)
FN3 323..412 CDD:238020 20/105 (19%)
FN3 419..511 CDD:238020 25/103 (24%)
FN3 516..604 CDD:238020 23/89 (26%)
FN3 612..706 CDD:238020 22/144 (15%)
FN3 714..819 CDD:238020 28/151 (19%)
FN3 929..1017 CDD:238020 20/87 (23%)
FN3 1022..1105 CDD:238020 15/86 (17%)
PTP_tm <1211..1295 CDD:408631 14/83 (17%)
R-PTPc-S-1 1342..1623 CDD:350473 126/282 (45%)
R-PTP-S-2 1625..1914 CDD:350475 15/50 (30%)
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020 18/100 (18%)
fn3 247..328 CDD:278470 11/80 (14%)
fn3 343..417 CDD:278470 19/97 (20%)
fn3 443..525 CDD:278470 20/86 (23%)
FN3 548..611 CDD:238020 18/72 (25%)
FN3 620..706 CDD:238020 16/89 (18%)
fn3 708..796 CDD:278470 18/105 (17%)
fn3 824..886 CDD:278470 13/70 (19%)
fn3 902..978 CDD:278470 16/82 (20%)
fn3 1013..1092 CDD:278470 21/93 (23%)
UP_III_II 1106..>1248 CDD:297589 39/215 (18%)
PTPc 1329..1582 CDD:214550 117/254 (46%)
PTPc 1355..1582 CDD:238006 110/228 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3031
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.