DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpro and Lar

DIOPT Version :9

Sequence 1:XP_036021846.1 Gene:Ptpro / 19277 MGIID:1097152 Length:1261 Species:Mus musculus
Sequence 2:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster


Alignment Length:1332 Identity:297/1332 - (22%)
Similarity:488/1332 - (36%) Gaps:440/1332 - (33%)


- Green bases have known domain annotations that are detailed below.


Mouse   111 STLPPPVV---FKATYHGLYYI---------------ITLVVVN--------------GNVVTKP 143
            |.|||||.   .:..|:.::::               :|.:|::              |..|...
  Fly   633 SWLPPPVERSNGRIIYYKVFFVEVGREDDEATTMTLNMTSIVLDELKRWTEYKIWVLAGTSVGDG 697

Mouse   144 SRSITVL-------------TKPLPVTSVSIY-DYKPSPE---TGVL--FEIHYPEKYNVFSRVN 189
            .||..::             .|..|:.|.||: .:||..|   .|::  :.||..|..:      
  Fly   698 PRSHPIILRTQEDVPGDPQDVKATPLNSTSIHVSWKPPLEKDRNGIIRGYHIHAQELRD------ 756

Mouse   190 ISYWEGRDFRTMLYKDFFKGKTVFNHWLPGLCYSNITFQLVSEATFNKSTL-------VEYSGVS 247
                ||:.|....:|                      |.:|....||.:.|       ::.:.::
  Fly   757 ----EGKGFLNEPFK----------------------FDVVDTLEFNVTGLQPDTKYSIQVAALT 795

Mouse   248 HEPKQHRTAPY---PPRNISVR-FVNLN----------KNNWEEPSGSFPE-------------- 284
            .:....|:|..   .|..:.|| .|:|.          :..||.|:.::.|              
  Fly   796 RKGDGDRSAAIVVKTPGGVPVRPTVSLKIMEREPIVSIELEWERPAQTYGELRGYRLRWGVKDQA 860

Mouse   285 --DSFIKPPQ------DSIGRDRRFHFPE----------------ETPETPPSNVSSGSPPSNVS 325
              :..:..||      |::.|...:.|..                :|||..|     |.||||::
  Fly   861 LKEEMLSGPQMTKKRFDNLERGVEYEFRVAGSNHIGIGQETVKIFQTPEGTP-----GGPPSNIT 920

Mouse   326 SAWPDPNSTDYESTSQPFWWDSASAAPENEEDFVSALPADYDTE--TTLDR---TEKPTADPFSA 385
            ..:..|:.....       ||..:....|      .:...||.:  ..:|.   :|:        
  Fly   921 IRFQTPDVLCVT-------WDPPTREHRN------GIITRYDVQFHKKIDHGLGSER-------- 964

Mouse   386 FPVQMTLSWLPPKPPTAFDGFNILIEREENFTDYLTVDEEAHEFVAELKEPGKYKLSVTTFSSSG 450
               .|||                   |:..||:              |:|..:|...|..::..|
  Fly   965 ---NMTL-------------------RKAVFTN--------------LEENTEYIFRVRAYTKQG 993

Mouse   451 A--------CETRKSQSAKSLSFYISPTGE-----WIEELTEKPQHVSVHVLSSTTALMSWTSSQ 502
            |        .||.:......:|.....|.|     |.|.:|.:.:.:...:..:.||:       
  Fly   994 AGPFSDKLIVETERDMGRAPMSLQAEATSEQTAEIWWEPVTSRGKLLGYKIFYTMTAV------- 1051

Mouse   503 ENYNSTIVSVVSLTCQKQKESQRLEKQYCTQVNSSKPVIENLVPGAQYQVVMYLRKGPLIGPPSD 567
            |:.:......|.||     ||..|               .||...|||.|.:..|....:|..|:
  Fly  1052 EDLDDWQTKTVGLT-----ESADL---------------VNLEKFAQYAVAIAARFKNGLGRLSE 1096

Mouse   568 PVTFAIVPTGIK-DLMLYPLGPTAVVLSWTRPI-------------LGVF-------------RK 605
            .||..|.|..:. :|..:.:...::.|||:.||             :.||             ::
  Fly  1097 KVTVRIKPEDVPLNLRAHDVSTHSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQGFSQTQIVPKR 1161

Mouse   606 YVVEMFYFNPTTMT--SEWTTYYEIAATVSLTASVRIASLLPAWYYN--FRVTMVTWGDPELSCC 666
            .::...|....|:.  |.:|||           :|.::::...:.|.  .::|:.|.        
  Fly  1162 EIILKHYVKTHTINELSPFTTY-----------NVNVSAIPSDYSYRPPTKITVTTQ-------- 1207

Mouse   667 DSSTISFITAP---VAPEITSVEYFNSLLYI----SWTYGDATTDLSHSRMLHWMVVAEGRKKIK 724
                   :.||   |.|:...|.....:|.|    |..||    .:||   .:.:||.|.:..:.
  Fly  1208 -------MAAPQPMVKPDFYGVVNGEEILVILPQASEEYG----PISH---YYLVVVPEDKSNLH 1258

Mouse   725 KSVTRNVMTAILSLPPGDIYNLSVTACTERGSNTSLPRLVKLEPAPPKSLFAVNK-TQTSVTLLW 788
            |...:.:...:|   ||                       :.:|..|.:.:...| .|.|:.   
  Fly  1259 KIPDQFLTDDLL---PG-----------------------RNKPERPNAPYIAAKFPQRSIP--- 1294

Mouse   789 VEEGVADFFEVFCQQLGSGH------NGKLQEPVAVSSHVVTISSLLPATAYNCSVTS--FSHD- 844
                       |...||||.      |.||:........|..:........|..|..|  .|.| 
  Fly  1295 -----------FTFHLGSGDDYHNFTNRKLEREKRYRIFVRAVVDTPQKHLYTSSPFSEFLSLDM 1348

Mouse   845 ------------TPSVPTFIAVSTMVTEVNPNVVVISVLAILSTLLIGLLLVTLVILRKKHLQ-- 895
                        .|:.|....||....:..|.::.:.:..::||.::...|:.|.:::::...  
  Fly  1349 REAPPGERPHRPDPNWPAEPEVSVNRNKDEPEILWVVLPLMVSTFIVSTALIVLCVVKRRRQPCK 1413

Mouse   896 -----------MARECGAGTFVNFASLEREGKLPYSWRRSVFALLTLLPSCLWTDYLLAFYINPW 949
                       ||.:.|||...:.         |...||..|....::.             :| 
  Fly  1414 TPDQAAVTRPLMAADLGAGPTPSD---------PVDMRRLNFQTPGMIS-------------HP- 1455

Mouse   950 SKNGLKKRKLTNPVQLDDFDSYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYT 1014
                        |:.:.:|.::|:.:..:.:.|||.::|.:: .|.......::|..|:.||||.
  Fly  1456 ------------PIPISEFANHIERLKSNDNQKFSQEYESIE-PGQQFTWDNSNLEHNKSKNRYA 1507

Mouse  1015 NILPYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSHIIV 1079
            |:..||.|||:|.::....|:|||||||..||.....|:||||||.||..|||:|..:.|:..||
  Fly  1508 NVTAYDHSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIV 1572

Mouse  1080 MLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMVSEEEEEDWASRHFRI--NYADEAQDVMHFNY 1142
            |:|:..|:.|:|||.||| |.....||.|.|.:...:|...::.|.|::  ...::.:::....:
  Fly  1573 MMTRLEERTRIKCDQYWP-TRGTETYGQIFVTITETQELATYSIRTFQLCRQGFNDRREIKQLQF 1636

Mouse  1143 TAWPDHGVP--PANAAESILQFVFTVRQQAAKSKGPMIIHCSAGVGRTGTFIALDRLLQHIRDHE 1205
            |||||||||  ||    ..|||:...|.......||:|:||||||||||.:|.:|.:|:.::..:
  Fly  1637 TAWPDHGVPDHPA----PFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEK 1697

Mouse  1206 FVDILGLVSEMRSYRMSMVQTEEQYIFIHQCV 1237
            .:||.|.|:.:|:.|..|||||:||||||..:
  Fly  1698 IIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAI 1729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtproXP_036021846.1 FN3 479..571 CDD:238020 19/91 (21%)
FN3 575..675 CDD:238020 19/130 (15%)
fn3 770..850 CDD:394996 19/101 (19%)
R-PTPc-O 996..1240 CDD:350462 105/246 (43%)
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020 13/73 (18%)
FN3 712..810 CDD:238020 23/129 (18%)
FN3 832..907 CDD:238020 9/74 (12%)
FN3 914..1005 CDD:238020 24/147 (16%)
FN3 1012..1101 CDD:238020 26/115 (23%)
fn3 1106..1198 CDD:278470 16/102 (16%)
PTPc 1476..1731 CDD:214550 110/260 (42%)
PTPc 1503..1731 CDD:238006 103/232 (44%)
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3031
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

Return to query results.
Submit another query.